Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   D7I46_RS08055 Genome accession   NZ_CP032627
Coordinates   1742959..1743900 (-) Length   313 a.a.
NCBI ID   WP_120772426.1    Uniprot ID   A0A387BB95
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1737959..1748900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS08030 (D7I46_08030) - 1738344..1738781 (-) 438 WP_120772421.1 hypothetical protein -
  D7I46_RS08035 (D7I46_08035) - 1738831..1739397 (-) 567 WP_120772422.1 hypothetical protein -
  D7I46_RS08040 (D7I46_08040) - 1739398..1740015 (-) 618 WP_120772423.1 hypothetical protein -
  D7I46_RS08045 (D7I46_08045) - 1740082..1740954 (-) 873 WP_120772424.1 Rgg/GadR/MutR family transcriptional regulator -
  D7I46_RS08050 (D7I46_08050) - 1741108..1742298 (-) 1191 WP_120772425.1 acetate kinase -
  D7I46_RS08055 (D7I46_08055) comYH 1742959..1743900 (-) 942 WP_120772426.1 class I SAM-dependent methyltransferase Machinery gene
  D7I46_RS08060 (D7I46_08060) - 1744130..1744399 (-) 270 WP_120772427.1 DUF3165 family protein -
  D7I46_RS08065 (D7I46_08065) typA 1744542..1746389 (-) 1848 WP_162930932.1 translational GTPase TypA -
  D7I46_RS08070 (D7I46_08070) - 1746564..1747721 (+) 1158 WP_162930862.1 MFS transporter -
  D7I46_RS08075 (D7I46_08075) - 1747794..1748006 (+) 213 WP_120772430.1 YqgQ family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34855.03 Da        Isoelectric Point: 4.9398

>NTDB_id=317309 D7I46_RS08055 WP_120772426.1 1742959..1743900(-) (comYH) [Lactococcus allomyrinae strain 1JSPR-7]
MNMEKVAQAFELVIANIEKISEELDTDFYDAFVEQNATYLGSAQLSKLSVLTENNDKLRQLSLNRMEWQKLFQFVLLKGA
QVAPMQANHAMTPDAIGVIFNFIIEHLNKNAELRLIEFGSGTGNLAETLLVNLQKKVDYVGFEVDDLLLDLAASMSEIIG
TNATFMQLDAVQSQVIAPADVVISDLPIGFYPDDKTASHFEVRERSGHTFAHHLLIEQSFKYLKEGAFGIFLAPEDLLTS
PQGELLKKWISAHGSIMAVITLPKSLFNADSKAIYLLKKGPASHATFVHPLSSLTDRESLQNFMTEFTKTVKL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=317309 D7I46_RS08055 WP_120772426.1 1742959..1743900(-) (comYH) [Lactococcus allomyrinae strain 1JSPR-7]
ATGAATATGGAAAAAGTTGCTCAGGCTTTTGAGTTAGTCATAGCAAATATTGAAAAAATTTCAGAAGAATTAGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCAACTTATTTAGGTTCTGCACAGTTGTCAAAGCTGTCAGTGCTTACAGAAA
ATAATGACAAACTTCGTCAGTTAAGCTTGAATAGAATGGAATGGCAGAAACTATTTCAGTTTGTTCTGCTAAAAGGTGCT
CAAGTCGCACCAATGCAAGCAAATCATGCAATGACTCCAGATGCAATTGGAGTAATCTTTAATTTTATCATTGAACATTT
GAACAAAAATGCAGAACTACGTTTGATTGAGTTTGGGTCAGGTACAGGAAATTTGGCAGAAACGTTACTTGTTAATTTGC
AGAAAAAAGTAGATTATGTTGGTTTCGAGGTTGATGATTTGTTGTTGGATTTGGCAGCATCAATGTCAGAGATTATCGGT
ACAAATGCAACTTTTATGCAACTTGATGCAGTACAATCGCAAGTTATCGCGCCAGCTGATGTTGTAATCAGCGACTTGCC
GATTGGATTTTATCCAGATGATAAAACTGCGAGTCATTTTGAAGTGAGAGAACGGTCAGGGCATACCTTTGCACATCATT
TGCTGATTGAACAGTCTTTTAAATACTTGAAAGAAGGGGCATTCGGAATTTTTCTTGCGCCGGAGGATTTGCTGACAAGT
CCTCAAGGAGAATTGTTGAAAAAATGGATAAGTGCGCATGGTAGCATTATGGCAGTGATTACTTTACCAAAATCATTATT
TAATGCAGATTCCAAAGCCATTTATCTCTTGAAAAAAGGACCGGCATCACACGCAACCTTTGTTCATCCCTTGTCATCGC
TGACAGACCGTGAAAGTTTGCAAAATTTCATGACAGAATTTACCAAAACTGTCAAATTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387BB95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.397

99.681

0.482
  comYH Streptococcus mutans UA159

48.077

99.681

0.479

Multiple sequence alignment