Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   D7I46_RS05815 Genome accession   NZ_CP032627
Coordinates   1236923..1237615 (-) Length   230 a.a.
NCBI ID   WP_120772040.1    Uniprot ID   A0A514ZAI2
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231923..1242615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS05800 (D7I46_05800) - 1233112..1233453 (-) 342 WP_120772037.1 P-II family nitrogen regulator -
  D7I46_RS05805 (D7I46_05805) - 1233559..1234800 (-) 1242 WP_120772038.1 ammonium transporter -
  D7I46_RS05810 (D7I46_05810) covS 1235436..1236914 (-) 1479 WP_120772039.1 HAMP domain-containing sensor histidine kinase Regulator
  D7I46_RS05815 (D7I46_05815) covR 1236923..1237615 (-) 693 WP_120772040.1 response regulator transcription factor Regulator
  D7I46_RS05820 (D7I46_05820) - 1237770..1238300 (-) 531 WP_120773304.1 DUF177 domain-containing protein -
  D7I46_RS05825 (D7I46_05825) - 1238894..1239139 (-) 246 WP_120772041.1 type B 50S ribosomal protein L31 -
  D7I46_RS05830 (D7I46_05830) - 1239301..1240380 (-) 1080 WP_120772042.1 carbamoyl phosphate synthase small subunit -
  D7I46_RS05835 (D7I46_05835) - 1240740..1241651 (-) 912 Protein_1154 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26721.42 Da        Isoelectric Point: 5.1218

>NTDB_id=317298 D7I46_RS05815 WP_120772040.1 1236923..1237615(-) (covR) [Lactococcus allomyrinae strain 1JSPR-7]
MTSKKILIIEDEKNLARFVSLELEHEGYSTEIKDNGRSGLEEALAKDYDLLLLDLMLPELDGFEVARRLRKEKDTPIIMM
TARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREDHAHAVEQSENTTFRDLVIDKTNRTVHRGKKVIDLTRRE
YDLLLTLMQNVGDVVTREHLVSQVWGYEEGTETNVVDVYIRYLRNKIDVEGHESYIQTVRGLGYVMRERK

Nucleotide


Download         Length: 693 bp        

>NTDB_id=317298 D7I46_RS05815 WP_120772040.1 1236923..1237615(-) (covR) [Lactococcus allomyrinae strain 1JSPR-7]
ATGACATCGAAAAAAATATTGATTATAGAGGATGAGAAAAATTTAGCACGCTTTGTTTCACTTGAATTAGAACATGAGGG
ATATTCAACAGAGATTAAAGATAATGGTCGTTCAGGTCTTGAAGAAGCTCTAGCAAAAGATTATGATTTACTTTTGTTGG
ACTTGATGTTACCAGAACTTGATGGTTTTGAGGTGGCTCGTCGTTTGCGTAAAGAAAAAGACACACCGATTATTATGATG
ACAGCACGTGATTCTACAATGGACCGAGTGGCTGGTCTTGATATTGGTGCAGACGACTACATTACTAAACCATTTGCTAT
TGAAGAACTGTTGGCGCGTGTTCGTGCGTTTTTCCGTCGTGAAGATCATGCTCATGCGGTAGAACAATCAGAAAATACGA
CTTTCAGAGATTTAGTGATTGATAAAACGAATCGTACAGTGCATCGTGGTAAAAAGGTCATTGACCTTACTCGCCGTGAA
TACGACTTACTTTTGACTTTGATGCAAAATGTTGGTGATGTTGTGACTCGTGAACATTTGGTCTCACAGGTTTGGGGATA
TGAAGAAGGAACAGAAACAAATGTTGTTGATGTCTATATTCGTTATCTTCGCAACAAAATTGATGTTGAAGGACATGAAA
GCTATATTCAAACGGTACGTGGTTTGGGATACGTGATGCGTGAACGTAAGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-226)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514ZAI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

95.217

100

0.952
  covR Streptococcus salivarius strain HSISS4

69.298

99.13

0.687
  vicR Streptococcus mutans UA159

44.589

100

0.448
  micA Streptococcus pneumoniae Cp1015

43.913

100

0.439

Multiple sequence alignment