Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   D7D53_RS08970 Genome accession   NZ_CP032621
Coordinates   1773439..1773675 (-) Length   78 a.a.
NCBI ID   WP_120770749.1    Uniprot ID   -
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1773951..1775302 1773439..1773675 flank 276


Gene organization within MGE regions


Location: 1773439..1775302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS08970 (D7D53_08970) comW 1773439..1773675 (-) 237 WP_120770749.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9809.25 Da        Isoelectric Point: 6.2034

>NTDB_id=317224 D7D53_RS08970 WP_120770749.1 1773439..1773675(-) (comW) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MLQNIYDQMTDFYDSIEEEYATFFGNNWDWEHFHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLIMKQGFVAC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=317224 D7D53_RS08970 WP_120770749.1 1773439..1773675(-) (comW) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGCTACAAAATATTTATGATCAGATGACTGATTTCTATGACAGTATCGAAGAAGAGTATGCTACTTTCTTTGGTAATAA
TTGGGACTGGGAACATTTTCATTTTAAATTTTTGATTTATTATTTAGTTAGATATGGCATTGGGTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGATAATGAAACAAGGTTTTGTTGCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis SK321

82.051

100

0.821
  comW Streptococcus mitis NCTC 12261

81.818

98.718

0.808
  comW Streptococcus pneumoniae Rx1

79.487

100

0.795
  comW Streptococcus pneumoniae D39

79.487

100

0.795
  comW Streptococcus pneumoniae R6

79.487

100

0.795
  comW Streptococcus pneumoniae TIGR4

79.487

100

0.795

Multiple sequence alignment