Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E7Z58_RS00565 Genome accession   NZ_CP039298
Coordinates   113008..114435 (-) Length   475 a.a.
NCBI ID   WP_000980594.1    Uniprot ID   -
Organism   Escherichia coli strain PigCaeca_1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108008..119435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z58_RS00535 (E7Z58_00535) yeeZ 108063..108887 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  E7Z58_RS00540 (E7Z58_00540) yeeY 108933..109862 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  E7Z58_RS00545 (E7Z58_00545) yoeI 110077..110139 (+) 63 WP_010723108.1 membrane protein YoeI -
  E7Z58_RS00550 (E7Z58_00550) plaP 110129..111487 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E7Z58_RS00555 (E7Z58_00555) tsuA 111666..112724 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  E7Z58_RS00560 (E7Z58_00560) tsuB 112738..112965 (+) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E7Z58_RS00565 (E7Z58_00565) sbcB 113008..114435 (-) 1428 WP_000980594.1 exodeoxyribonuclease I Machinery gene
  E7Z58_RS00570 (E7Z58_00570) dacD 114644..115810 (+) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E7Z58_RS00575 (E7Z58_00575) sbmC 115929..116402 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  E7Z58_RS00580 (E7Z58_00580) yeeA 116600..117658 (+) 1059 WP_001200890.1 FUSC family protein -
  E7Z58_RS00585 (E7Z58_00585) tmaR 117830..118159 (+) 330 WP_000450409.1 DUF496 family protein -
  E7Z58_RS00590 (E7Z58_00590) - 118260..118442 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  E7Z58_RS00595 (E7Z58_00595) - 118496..118642 (+) 147 Protein_119 transposase domain-containing protein -
  E7Z58_RS00600 (E7Z58_00600) - 118931..119011 (-) 81 Protein_120 hypothetical protein -
  E7Z58_RS00605 (E7Z58_00605) yeeW 119057..119251 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=317224 E7Z58_RS00565 WP_000980594.1 113008..114435(-) (sbcB) [Escherichia coli strain PigCaeca_1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=317224 E7Z58_RS00565 WP_000980594.1 113008..114435(-) (sbcB) [Escherichia coli strain PigCaeca_1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment