Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   DZ927_RS10135 Genome accession   NZ_CP039293
Coordinates   2068688..2069017 (+) Length   109 a.a.
NCBI ID   WP_019485985.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PABL048     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2063688..2074017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ927_RS10115 (DZ927_010115) - 2064021..2064419 (+) 399 WP_224396978.1 hypothetical protein -
  DZ927_RS10120 (DZ927_010120) - 2064419..2065360 (+) 942 WP_306430721.1 NAD-dependent epimerase/dehydratase family protein -
  DZ927_RS10125 (DZ927_010125) - 2065461..2066486 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  DZ927_RS10130 (DZ927_010130) - 2066499..2068497 (+) 1999 Protein_1961 polysaccharide biosynthesis protein -
  DZ927_RS10135 (DZ927_010135) comEA/comE1 2068688..2069017 (+) 330 WP_019485985.1 ComEA family DNA-binding protein Machinery gene
  DZ927_RS10145 (DZ927_010145) - 2069234..2070430 (-) 1197 WP_019485986.1 amino acid aminotransferase -
  DZ927_RS10150 (DZ927_010150) uvrB 2070618..2072630 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11325.23 Da        Isoelectric Point: 8.0459

>NTDB_id=317141 DZ927_RS10135 WP_019485985.1 2068688..2069017(+) (comEA/comE1) [Pseudomonas aeruginosa strain PABL048]
MHLIKSALLLILFACLPFSASAAPVAVAKNPAAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=317141 DZ927_RS10135 WP_019485985.1 2068688..2069017(+) (comEA/comE1) [Pseudomonas aeruginosa strain PABL048]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGGCGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385