Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   D7D50_RS00220 Genome accession   NZ_CP032620
Coordinates   35901..36560 (+) Length   219 a.a.
NCBI ID   WP_120701161.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30901..41560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS00185 (D7D50_00185) typA 31181..33028 (-) 1848 WP_023022455.1 translational GTPase TypA -
  D7D50_RS00190 (D7D50_00190) - 33267..33992 (+) 726 WP_023022453.1 16S rRNA pseudouridine(516) synthase -
  D7D50_RS00200 (D7D50_00200) - 34186..34419 (-) 234 WP_023022451.1 hypothetical protein -
  D7D50_RS00205 (D7D50_00205) - 34495..34839 (-) 345 WP_042507500.1 rhodanese-like domain-containing protein -
  D7D50_RS00210 (D7D50_00210) - 34878..35096 (-) 219 WP_023022447.1 YqgQ family protein -
  D7D50_RS00215 (D7D50_00215) - 35220..35747 (-) 528 WP_006596795.1 Dps family protein -
  D7D50_RS00220 (D7D50_00220) cclA/cilC 35901..36560 (+) 660 WP_120701161.1 prepilin peptidase Machinery gene
  D7D50_RS00225 (D7D50_00225) trpB 36567..37754 (-) 1188 WP_120701162.1 tryptophan synthase subunit beta -
  D7D50_RS00230 (D7D50_00230) - 38189..38722 (-) 534 WP_174705347.1 VanZ family protein -
  D7D50_RS00235 (D7D50_00235) rlmN 38700..39788 (-) 1089 WP_023022438.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  D7D50_RS00240 (D7D50_00240) - 39807..40385 (-) 579 WP_120701163.1 YutD family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24938.08 Da        Isoelectric Point: 8.0267

>NTDB_id=317100 D7D50_RS00220 WP_120701161.1 35901..36560(+) (cclA/cilC) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MINFYFFTVGSCIASFLGLVIDRFPESSIIRPRSHCDHCQQTLRPLDLIPILSQVLFRFRCRYCQSPLPYWYALFEAWSG
LLFLLCYQGLLPIFHLFVLLGSCVLAIYDLRSMEYPLLLWLVLHALCLFFTSPTLLMGVFLFLGVLSAVYSIGIGAGDFL
LLATFSLTLSAVQVLLVMQGASLIGLLVFLLKKEKDRIPFVPCLFLSYQALLFFTIFSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=317100 D7D50_RS00220 WP_120701161.1 35901..36560(+) (cclA/cilC) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGATCAACTTTTATTTTTTTACAGTCGGTTCCTGTATTGCCTCCTTTTTAGGACTCGTCATCGACCGCTTTCCAGAAAG
CTCCATCATTCGTCCAAGAAGCCATTGCGACCATTGCCAACAGACCTTGAGACCTCTGGACCTGATTCCTATCCTCTCAC
AAGTCCTCTTTCGATTCCGTTGTCGCTACTGCCAGAGTCCGCTTCCTTATTGGTATGCTCTCTTTGAAGCCTGGTCTGGC
CTCCTTTTTTTGCTGTGCTATCAGGGCCTTCTTCCTATTTTTCATCTTTTCGTTCTGCTTGGTAGTTGTGTTTTGGCCAT
CTACGATTTGCGCTCCATGGAGTATCCGCTTCTCCTCTGGCTGGTGCTCCACGCTCTTTGCCTGTTTTTCACCAGCCCTA
CCCTCTTGATGGGAGTCTTTCTCTTCTTAGGAGTCCTGTCAGCTGTTTACTCCATCGGCATTGGAGCAGGGGACTTTCTC
TTACTGGCTACTTTTTCTTTGACCCTCTCAGCTGTCCAAGTCCTCCTCGTCATGCAAGGGGCTTCTCTCATTGGTCTCCT
TGTCTTCCTCTTAAAAAAAGAAAAAGACCGGATTCCTTTTGTTCCCTGTCTTTTTCTGAGTTATCAGGCTTTACTGTTTT
TTACAATTTTTAGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

53.521

97.26

0.521
  cclA/cilC Streptococcus pneumoniae Rx1

53.521

97.26

0.521
  cclA/cilC Streptococcus pneumoniae D39

53.521

97.26

0.521
  cclA/cilC Streptococcus pneumoniae R6

53.521

97.26

0.521
  cclA/cilC Streptococcus mitis NCTC 12261

53.052

97.26

0.516
  cclA/cilC Streptococcus pneumoniae TIGR4

54.106

94.521

0.511

Multiple sequence alignment