Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D6Z43_RS16770 Genome accession   NZ_CP032616
Coordinates   3547031..3547516 (-) Length   161 a.a.
NCBI ID   WP_044872677.1    Uniprot ID   A0AAD0TDV7
Organism   Pseudomonas sp. DY-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3542031..3552516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6Z43_RS16755 (D6Z43_16755) - 3543350..3544792 (-) 1443 WP_120653270.1 aldehyde dehydrogenase family protein -
  D6Z43_RS16760 (D6Z43_16760) kdgD 3544814..3545725 (-) 912 WP_120653271.1 5-dehydro-4-deoxyglucarate dehydratase -
  D6Z43_RS16765 (D6Z43_16765) - 3546131..3546880 (-) 750 WP_120653272.1 FadR/GntR family transcriptional regulator -
  D6Z43_RS16770 (D6Z43_16770) ssb 3547031..3547516 (-) 486 WP_044872677.1 single-stranded DNA-binding protein Machinery gene
  D6Z43_RS16775 (D6Z43_16775) - 3547526..3548920 (-) 1395 WP_120653273.1 MFS transporter -
  D6Z43_RS16780 (D6Z43_16780) uvrA 3549129..3551963 (+) 2835 WP_120653274.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17919.86 Da        Isoelectric Point: 5.3193

>NTDB_id=317050 D6Z43_RS16770 WP_044872677.1 3547031..3547516(-) (ssb) [Pseudomonas sp. DY-1]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTREWEKDGVKRYTTEIVVDINGQMQLLGGRPGSEGDAPRAPRPQREPQQSAPQQRPAPQPAAQPAPDYDSFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=317050 D6Z43_RS16770 WP_044872677.1 3547031..3547516(-) (ssb) [Pseudomonas sp. DY-1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGATCCGGAGACCCGCTACCTGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGTCCTGGAAGGACAAGCAAACCGGCCAGCAGCAGGAACGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGCCGTCTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCACAAGTCTACGTCGAA
GGTTCCCTGCGTACCCGCGAGTGGGAAAAAGACGGCGTGAAGCGTTACACCACCGAAATCGTGGTCGACATCAACGGCCA
GATGCAGCTGCTCGGCGGCCGTCCTGGCAGCGAAGGCGACGCACCGCGTGCTCCGCGCCCGCAGCGCGAGCCGCAGCAGT
CTGCTCCGCAGCAGCGTCCGGCTCCGCAGCCAGCCGCCCAACCGGCTCCGGACTACGACAGCTTCGACGACGACATCCCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.307

100

0.615
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.547
  ssb Neisseria meningitidis MC58

45.251

100

0.503
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.503

Multiple sequence alignment