Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D6869_RS12315 | Genome accession | NZ_CP032526 |
| Coordinates | 2432138..2432638 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain 4B0 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2427138..2437638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6869_RS12290 (D6869_12450) | gnd | 2428263..2429168 (-) | 906 | WP_011836101.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| D6869_RS12295 (D6869_12455) | - | 2429538..2430386 (+) | 849 | WP_011836102.1 | MurR/RpiR family transcriptional regulator | - |
| D6869_RS12300 (D6869_12460) | - | 2430425..2430733 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| D6869_RS12305 (D6869_12465) | - | 2430805..2431590 (-) | 786 | WP_011836104.1 | metallophosphoesterase | - |
| D6869_RS12310 (D6869_12470) | rpsR | 2431721..2431966 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| D6869_RS12315 (D6869_12475) | ssb | 2432138..2432638 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| D6869_RS12320 (D6869_12480) | rpsF | 2432668..2432961 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| D6869_RS12325 (D6869_12485) | - | 2433155..2434009 (-) | 855 | WP_011836105.1 | undecaprenyl-diphosphate phosphatase | - |
| D6869_RS12330 (D6869_12490) | - | 2434531..2435997 (+) | 1467 | WP_014735185.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=316742 D6869_RS12315 WP_011677241.1 2432138..2432638(-) (ssb) [Lactococcus cremoris strain 4B0]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=316742 D6869_RS12315 WP_011677241.1 2432138..2432638(-) (ssb) [Lactococcus cremoris strain 4B0]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGATCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |