Detailed information NTG0316674

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: D6I99_RS07050
• Genome accession: NZ_CP032522
• Coordinates: 1370637..1372049 (-)
• Length: 470 a.a.
• NCBI ID: WP_044260333.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BC
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1365637..1377049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D6I99_RS07025	-	1365961..1366725 (+)	765	WP_002855821.1	TSUP family transporter	-
D6I99_RS07030	ctsF	1366718..1367899 (-)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
D6I99_RS07035	ctsE	1367896..1369455 (-)	1560	WP_136696366.1	GspE/PulE family protein	Machinery gene
D6I99_RS07040	ctsX	1369445..1370032 (-)	588	WP_002880443.1	hypothetical protein	Machinery gene
D6I99_RS07045	ctsP	1370036..1370644 (-)	609	WP_136696367.1	ATP-binding protein	Machinery gene
D6I99_RS07050	ctsD	1370637..1372049 (-)	1413	WP_044260333.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
D6I99_RS07055	ctsR	1372027..1372338 (-)	312	WP_002880445.1	hypothetical protein	Machinery gene
D6I99_RS07060	nifJ	1372362..1375922 (-)	3561	WP_002880446.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
D6I99_RS07065	-	1376015..1376656 (-)	642	WP_052797933.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 52983.48 Da
• Isoelectric Point: 6.6156

>NTDB_id=316674 D6I99_RS07050 WP_044260333.1 1370637..1372049(-) (ctsD) [Campylobacter jejuni strain BC]
MIRLILINILCCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQANNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=316674 D6I99_RS07050 WP_044260333.1 1370637..1372049(-) (ctsD) [Campylobacter jejuni strain BC]
ATGATAAGATTAATATTAATTAACATTCTTTGTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGATGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGCAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.149	100	0.991