Detailed information NTG0316670

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: D6I99_RS07030
• Genome accession: NZ_CP032522
• Coordinates: 1366718..1367899 (-)
• Length: 393 a.a.
• NCBI ID: WP_002868229.1
• Uniprot ID: A0AB36G5F3
• Organism: Campylobacter jejuni strain BC
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1361718..1372899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D6I99_RS07000	-	1362259..1362600 (+)	342	WP_002784057.1	hypothetical protein	-
D6I99_RS07005	flgM	1362663..1362860 (+)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
D6I99_RS07010	-	1362905..1363339 (+)	435	WP_002826016.1	flagellar protein FlgN	-
D6I99_RS07015	flgK	1363349..1365175 (+)	1827	WP_002867029.1	flagellar hook-associated protein FlgK	-
D6I99_RS07020	-	1365192..1365957 (+)	766	Protein_1360	TIGR02757 family protein	-
D6I99_RS07025	-	1365961..1366725 (+)	765	WP_002855821.1	TSUP family transporter	-
D6I99_RS07030	ctsF	1366718..1367899 (-)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
D6I99_RS07035	ctsE	1367896..1369455 (-)	1560	WP_136696366.1	GspE/PulE family protein	Machinery gene
D6I99_RS07040	ctsX	1369445..1370032 (-)	588	WP_002880443.1	hypothetical protein	Machinery gene
D6I99_RS07045	ctsP	1370036..1370644 (-)	609	WP_136696367.1	ATP-binding protein	Machinery gene
D6I99_RS07050	ctsD	1370637..1372049 (-)	1413	WP_044260333.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
D6I99_RS07055	ctsR	1372027..1372338 (-)	312	WP_002880445.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 45730.33 Da
• Isoelectric Point: 9.0938

>NTDB_id=316670 D6I99_RS07030 WP_002868229.1 1366718..1367899(-) (ctsF) [Campylobacter jejuni strain BC]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide

• Length: 1182 bp

>NTDB_id=316670 D6I99_RS07030 WP_002868229.1 1366718..1367899(-) (ctsF) [Campylobacter jejuni strain BC]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	98.98	99.746	0.987