Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   D6I99_RS07045 Genome accession   NZ_CP032522
Coordinates   1370036..1370644 (-) Length   202 a.a.
NCBI ID   WP_136696367.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1365036..1375644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS07020 - 1365192..1365957 (+) 766 Protein_1360 TIGR02757 family protein -
  D6I99_RS07025 - 1365961..1366725 (+) 765 WP_002855821.1 TSUP family transporter -
  D6I99_RS07030 ctsF 1366718..1367899 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  D6I99_RS07035 ctsE 1367896..1369455 (-) 1560 WP_136696366.1 GspE/PulE family protein Machinery gene
  D6I99_RS07040 ctsX 1369445..1370032 (-) 588 WP_002880443.1 hypothetical protein Machinery gene
  D6I99_RS07045 ctsP 1370036..1370644 (-) 609 WP_136696367.1 ATP-binding protein Machinery gene
  D6I99_RS07050 ctsD 1370637..1372049 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  D6I99_RS07055 ctsR 1372027..1372338 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23732.75 Da        Isoelectric Point: 9.9955

>NTDB_id=316673 D6I99_RS07045 WP_136696367.1 1370036..1370644(-) (ctsP) [Campylobacter jejuni strain BC]
MSKIISFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=316673 D6I99_RS07045 WP_136696367.1 1370036..1370644(-) (ctsP) [Campylobacter jejuni strain BC]
ATGAGTAAAATTATTTCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.01

100

0.99

Multiple sequence alignment