Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   D6I99_RS07055 Genome accession   NZ_CP032522
Coordinates   1372027..1372338 (-) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1367027..1377338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS07035 ctsE 1367896..1369455 (-) 1560 WP_136696366.1 GspE/PulE family protein Machinery gene
  D6I99_RS07040 ctsX 1369445..1370032 (-) 588 WP_002880443.1 hypothetical protein Machinery gene
  D6I99_RS07045 ctsP 1370036..1370644 (-) 609 WP_136696367.1 ATP-binding protein Machinery gene
  D6I99_RS07050 ctsD 1370637..1372049 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  D6I99_RS07055 ctsR 1372027..1372338 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  D6I99_RS07060 nifJ 1372362..1375922 (-) 3561 WP_002880446.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  D6I99_RS07065 - 1376015..1376656 (-) 642 WP_052797933.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=316675 D6I99_RS07055 WP_002880445.1 1372027..1372338(-) (ctsR) [Campylobacter jejuni strain BC]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=316675 D6I99_RS07055 WP_002880445.1 1372027..1372338(-) (ctsR) [Campylobacter jejuni strain BC]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment