Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D6I95_RS10975 Genome accession   NZ_CP032521
Coordinates   2358231..2358755 (-) Length   174 a.a.
NCBI ID   WP_123050572.1    Uniprot ID   -
Organism   Alcaligenes faecalis strain J481     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2353231..2363755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I95_RS10950 (D6I95_10950) - 2353977..2354684 (+) 708 WP_123050568.1 GntR family transcriptional regulator -
  D6I95_RS10955 (D6I95_10955) - 2354685..2355086 (-) 402 WP_205649086.1 hypothetical protein -
  D6I95_RS10960 (D6I95_10960) - 2355256..2355804 (-) 549 WP_123050569.1 ferritin-like domain-containing protein -
  D6I95_RS10965 (D6I95_10965) - 2356360..2356893 (+) 534 WP_123050570.1 Chromate resistance protein ChrB -
  D6I95_RS10970 (D6I95_10970) - 2356853..2358103 (+) 1251 WP_240631926.1 MFS transporter -
  D6I95_RS10975 (D6I95_10975) ssb 2358231..2358755 (-) 525 WP_123050572.1 single-stranded DNA-binding protein Machinery gene
  D6I95_RS10980 (D6I95_10980) - 2359016..2360227 (-) 1212 WP_123050573.1 MFS transporter -
  D6I95_RS10985 (D6I95_10985) uvrA 2360339..2363302 (+) 2964 WP_123050574.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19060.10 Da        Isoelectric Point: 5.3488

>NTDB_id=316649 D6I95_RS10975 WP_123050572.1 2358231..2358755(-) (ssb) [Alcaligenes faecalis strain J481]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGGEMGGGSMGGGEYGGGGGGAPAPQRAQRPAPQQQQQQQQAPRNTAP
MSDNLADMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=316649 D6I95_RS10975 WP_123050572.1 2358231..2358755(-) (ssb) [Alcaligenes faecalis strain J481]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGTAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTATAACCGTCTGGCTGAAATTGCGGGTGAGTATCTGCGCAAAGGCCGTCCGGTTTACGTAGAAGGT
CGTTTGCGTACCCGTAAATGGACGGGCCAGGACGGTCAGGAGCGTTTCACCACGGAAATTATCGCCGAGCAAATGCAAAT
GCTCGGTGGCCGCGACGGTGGTGGTGAGATGGGTGGTGGCAGTATGGGCGGTGGTGAATACGGTGGTGGCGGTGGTGGTG
CACCGGCACCGCAACGTGCTCAGCGTCCAGCGCCTCAACAACAGCAGCAACAACAACAGGCTCCACGTAATACCGCTCCT
ATGTCGGACAATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.785

100

0.557
  ssb Glaesserella parasuis strain SC1401

47.423

100

0.529
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.494
  ssb Neisseria meningitidis MC58

48.023

100

0.489

Multiple sequence alignment