Detailed information NTG0316646

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: D6I95_RS05590
• Genome accession: NZ_CP032521
• Coordinates: 1176637..1177125 (-)
• Length: 162 a.a.
• NCBI ID: WP_123049747.1
• Uniprot ID: -
• Organism: Alcaligenes faecalis strain J481
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1174824..1188712	1176637..1177125	within	0

Gene organization within MGE regions

Location: 1174824..1188712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D6I95_RS05565 (D6I95_05565)	-	1174824..1175420 (+)	597	WP_123049743.1	hypothetical protein	-
D6I95_RS05570 (D6I95_05570)	-	1175507..1175800 (-)	294	WP_123049744.1	HigA family addiction module antitoxin	-
D6I95_RS05575 (D6I95_05575)	-	1175816..1175946 (-)	131	Protein_1105	type II toxin-antitoxin system RelE/ParE family toxin	-
D6I95_RS05580 (D6I95_05580)	-	1176009..1176272 (-)	264	WP_123049745.1	BrnA antitoxin family protein	-
D6I95_RS05585 (D6I95_05585)	-	1176256..1176540 (-)	285	WP_123049746.1	BrnT family toxin	-
D6I95_RS05590 (D6I95_05590)	ssb	1176637..1177125 (-)	489	WP_123049747.1	single-stranded DNA-binding protein	Machinery gene
D6I95_RS05595 (D6I95_05595)	-	1177643..1178056 (-)	414	WP_123049748.1	antirestriction protein	-
D6I95_RS05605 (D6I95_05605)	-	1179053..1179583 (-)	531	WP_123049749.1	hypothetical protein	-
D6I95_RS17900	-	1179712..1179903 (-)	192	WP_164461369.1	hypothetical protein	-
D6I95_RS05610 (D6I95_05610)	-	1180003..1181886 (-)	1884	WP_123049750.1	ParB/RepB/Spo0J family partition protein	-
D6I95_RS17905	-	1182132..1182362 (-)	231	WP_164461370.1	hypothetical protein	-
D6I95_RS05615 (D6I95_05615)	-	1183019..1183321 (-)	303	WP_123049751.1	hypothetical protein	-
D6I95_RS05620 (D6I95_05620)	-	1183374..1184423 (-)	1050	WP_123049752.1	hypothetical protein	-
D6I95_RS05625 (D6I95_05625)	-	1185083..1186603 (+)	1521	WP_164461371.1	hypothetical protein	-
D6I95_RS05630 (D6I95_05630)	-	1186747..1187016 (-)	270	WP_123049754.1	helix-turn-helix domain-containing protein	-
D6I95_RS05635 (D6I95_05635)	-	1187576..1188712 (+)	1137	WP_240632120.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 162 a.a.
• Molecular weight: 17843.04 Da
• Isoelectric Point: 7.9858

>NTDB_id=316646 D6I95_RS05590 WP_123049747.1 1176637..1177125(-) (ssb) [Alcaligenes faecalis strain J481]
MASVNKVILVGILGRDPEVRYSAEGAAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEEMQMLGGGRGSEDASGAPEPQPQGKPAGKRPAKQAGKKAKPEAPPGSDNLADMTDDI
PF

Nucleotide

• Length: 489 bp

>NTDB_id=316646 D6I95_RS05590 WP_123049747.1 1176637..1177125(-) (ssb) [Alcaligenes faecalis strain J481]
ATGGCATCGGTAAACAAAGTGATTTTGGTGGGAATCCTTGGACGTGACCCCGAAGTACGCTATAGCGCGGAAGGTGCTGC
TATCTGCAATATTTCCATTGCCACCACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGTCGCGAGGAAACGGAATGGC
ACCGTGTTGTGTTCTACAACCGATTGGCTGAAATTGCGGGTGAGTACCTGCGTAAAGGCCGCCCCGTCTACGTAGAAGGT
CGTTTGCGTACCCGTAAATGGACGGGTCAGGACGGTCAGGAGCGTTTCACCACGGAGATCATCGCCGAGGAAATGCAGAT
GCTTGGTGGTGGGCGTGGTAGTGAGGACGCCAGCGGAGCGCCTGAGCCACAACCGCAAGGCAAGCCAGCAGGCAAACGTC
CAGCTAAGCAAGCGGGCAAGAAAGCAAAGCCTGAGGCACCGCCTGGATCGGATAATTTGGCGGATATGACAGACGATATT
CCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Neisseria gonorrhoeae MS11	48.588	100	0.531
ssb	Neisseria meningitidis MC58	48.864	100	0.531
ssb	Glaesserella parasuis strain SC1401	45.902	100	0.519
ssb	Vibrio cholerae strain A1552	47.191	100	0.519