Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | D5H27_RS17345 | Genome accession | NZ_CP032506 |
| Coordinates | 3479772..3480290 (-) | Length | 172 a.a. |
| NCBI ID | WP_007615071.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain JT3-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3479772..3526088 | 3479772..3480290 | within | 0 |
Gene organization within MGE regions
Location: 3479772..3526088
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5H27_RS17345 (D5H27_17125) | ssbA | 3479772..3480290 (-) | 519 | WP_007615071.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| D5H27_RS17350 (D5H27_17130) | rpsF | 3480330..3480617 (-) | 288 | WP_004392977.1 | 30S ribosomal protein S6 | - |
| D5H27_RS17355 (D5H27_17135) | ychF | 3480729..3481829 (-) | 1101 | WP_004392975.1 | redox-regulated ATPase YchF | - |
| D5H27_RS17360 (D5H27_17140) | - | 3481956..3483959 (-) | 2004 | WP_032875323.1 | molybdopterin-dependent oxidoreductase | - |
| D5H27_RS17365 (D5H27_17145) | - | 3484006..3484212 (-) | 207 | WP_004392973.1 | DUF951 domain-containing protein | - |
| D5H27_RS17370 (D5H27_17150) | - | 3484298..3485323 (-) | 1026 | WP_087920784.1 | hypothetical protein | - |
| D5H27_RS17375 (D5H27_17155) | - | 3485467..3485970 (+) | 504 | WP_032875313.1 | GNAT family N-acetyltransferase | - |
| D5H27_RS17380 (D5H27_17160) | yyaC | 3486145..3486759 (+) | 615 | WP_032875310.1 | spore protease YyaC | - |
| D5H27_RS17385 (D5H27_17165) | - | 3486789..3487640 (-) | 852 | WP_032875307.1 | ParB/RepB/Spo0J family partition protein | - |
| D5H27_RS17390 (D5H27_17170) | soj | 3487633..3488394 (-) | 762 | WP_007409899.1 | sporulation initiation inhibitor protein Soj | - |
| D5H27_RS17395 (D5H27_17175) | noc | 3488693..3489544 (-) | 852 | WP_007615083.1 | nucleoid occlusion protein | - |
| D5H27_RS17400 (D5H27_17180) | rsmG | 3489666..3490385 (-) | 720 | WP_007409901.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| D5H27_RS17405 (D5H27_17185) | mnmG | 3490399..3492285 (-) | 1887 | WP_007615086.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| D5H27_RS17410 (D5H27_17190) | mnmE | 3492302..3493681 (-) | 1380 | WP_007615094.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| D5H27_RS17415 (D5H27_17195) | jag | 3493971..3494612 (-) | 642 | WP_032875304.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| D5H27_RS17420 (D5H27_17200) | spoIIIJ | 3494609..3495358 (-) | 750 | WP_007409906.1 | YidC family membrane integrase SpoIIIJ | - |
| D5H27_RS17425 (D5H27_17205) | rnpA | 3495519..3495869 (-) | 351 | WP_004392944.1 | ribonuclease P protein component | - |
| D5H27_RS17430 (D5H27_17210) | rpmH | 3496024..3496158 (-) | 135 | WP_003178075.1 | 50S ribosomal protein L34 | - |
| D5H27_RS17440 (D5H27_17215) | dnaA | 3496778..3498118 (+) | 1341 | WP_007409908.1 | chromosomal replication initiator protein DnaA | - |
| D5H27_RS17445 (D5H27_17220) | dnaN | 3498303..3499439 (+) | 1137 | WP_007409909.1 | DNA polymerase III subunit beta | - |
| D5H27_RS17450 (D5H27_17225) | rlbA | 3499574..3499789 (+) | 216 | WP_004392910.1 | ribosome maturation protein RlbA | - |
| D5H27_RS17455 (D5H27_17230) | recF | 3499805..3500917 (+) | 1113 | WP_007409910.1 | DNA replication/repair protein RecF | Machinery gene |
| D5H27_RS17460 (D5H27_17235) | - | 3500935..3501180 (+) | 246 | WP_004392908.1 | extracellular matrix/biofilm biosynthesis regulator RemA family protein | - |
| D5H27_RS17465 (D5H27_17240) | gyrB | 3501237..3503153 (+) | 1917 | WP_007409911.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| D5H27_RS17470 (D5H27_17245) | gyrA | 3503369..3505828 (+) | 2460 | WP_032875298.1 | DNA gyrase subunit A | - |
| D5H27_RS17500 (D5H27_17275) | - | 3511166..3512116 (-) | 951 | WP_032872151.1 | YaaC family protein | - |
| D5H27_RS17505 (D5H27_17280) | guaB | 3512237..3513703 (+) | 1467 | WP_007408741.1 | IMP dehydrogenase | - |
| D5H27_RS17510 (D5H27_17285) | dacA | 3513856..3515187 (+) | 1332 | WP_029326157.1 | D-alanyl-D-alanine carboxypeptidase | - |
| D5H27_RS17515 (D5H27_17290) | pdxS | 3515384..3516268 (+) | 885 | WP_003150714.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| D5H27_RS17520 (D5H27_17295) | pdxT | 3516290..3516880 (+) | 591 | WP_007615126.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| D5H27_RS17525 (D5H27_17300) | serS | 3517200..3518477 (+) | 1278 | WP_032872141.1 | serine--tRNA ligase | - |
| D5H27_RS17530 (D5H27_17305) | - | 3518488..3519633 (-) | 1146 | WP_032872144.1 | glycerate kinase | - |
| D5H27_RS17540 (D5H27_17315) | dck | 3520074..3520727 (-) | 654 | WP_007615132.1 | deoxyadenosine/deoxycytidine kinase | - |
| D5H27_RS17545 (D5H27_17320) | dgk | 3520724..3521347 (-) | 624 | WP_014416710.1 | deoxyguanosine kinase | - |
| D5H27_RS17550 (D5H27_17325) | - | 3521443..3522726 (-) | 1284 | WP_032872147.1 | glycoside hydrolase family 18 protein | - |
| D5H27_RS17555 (D5H27_17330) | - | 3522798..3523310 (-) | 513 | WP_044803089.1 | isochorismatase family cysteine hydrolase | - |
| D5H27_RS17560 (D5H27_17335) | tadA | 3523432..3523914 (+) | 483 | WP_007615141.1 | tRNA adenosine(34) deaminase TadA | - |
| D5H27_RS17570 (D5H27_17345) | dnaX | 3524397..3526088 (+) | 1692 | WP_032872149.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18772.33 Da Isoelectric Point: 4.7621
>NTDB_id=316556 D5H27_RS17345 WP_007615071.1 3479772..3480290(-) (ssbA) [Bacillus velezensis strain JT3-1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=316556 D5H27_RS17345 WP_007615071.1 3479772..3480290(-) (ssbA) [Bacillus velezensis strain JT3-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
98.837 |
100 |
0.988 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.757 |
100 |
0.605 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
34.973 |
100 |
0.372 |