Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLWM1_RS11995 | Genome accession | NZ_CP032500 |
| Coordinates | 2334578..2335078 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain WM1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2330642..2356401 | 2334578..2335078 | within | 0 |
Gene organization within MGE regions
Location: 2330642..2356401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLWM1_RS11970 (LLWM1_2282) | gnd | 2330642..2331547 (-) | 906 | WP_032398514.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLWM1_RS11975 (LLWM1_2283) | - | 2331911..2332759 (+) | 849 | WP_003131770.1 | MurR/RpiR family transcriptional regulator | - |
| LLWM1_RS11980 (LLWM1_2284) | - | 2332797..2333105 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| LLWM1_RS11985 (LLWM1_2285) | - | 2333187..2333960 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| LLWM1_RS11990 (LLWM1_2286) | rpsR | 2334160..2334405 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLWM1_RS11995 (LLWM1_2287) | ssb | 2334578..2335078 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LLWM1_RS12000 (LLWM1_2288) | rpsF | 2335108..2335401 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLWM1_RS12005 (LLWM1_2289) | - | 2335593..2336447 (-) | 855 | WP_058221735.1 | undecaprenyl-diphosphate phosphatase | - |
| LLWM1_RS12010 (LLWM1_2290) | - | 2336970..2338436 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
| LLWM1_RS12015 (LLWM1_2291) | dnaX | 2338471..2340129 (-) | 1659 | WP_058221736.1 | DNA polymerase III subunit gamma/tau | - |
| LLWM1_RS12020 (LLWM1_2292) | - | 2340178..2340819 (-) | 642 | WP_003131958.1 | phosphotransferase | - |
| LLWM1_RS12025 (LLWM1_2293) | - | 2340850..2341338 (-) | 489 | WP_003131959.1 | GAF domain-containing protein | - |
| LLWM1_RS12030 (LLWM1_2294) | - | 2341422..2341694 (+) | 273 | WP_003131960.1 | chorismate mutase | - |
| LLWM1_RS12035 (LLWM1_2295) | - | 2341782..2342228 (-) | 447 | WP_003131961.1 | hypothetical protein | - |
| LLWM1_RS12040 (LLWM1_2296) | - | 2342518..2343702 (-) | 1185 | WP_058221737.1 | site-specific integrase | - |
| LLWM1_RS12045 (LLWM1_2297) | - | 2344201..2344395 (-) | 195 | WP_058221577.1 | hypothetical protein | - |
| LLWM1_RS12050 (LLWM1_2298) | - | 2345199..2345513 (-) | 315 | WP_011835952.1 | hypothetical protein | - |
| LLWM1_RS12055 (LLWM1_2299) | - | 2346248..2347192 (-) | 945 | WP_058221334.1 | Abi family protein | - |
| LLWM1_RS12060 (LLWM1_2300) | - | 2347653..2347847 (-) | 195 | WP_021212116.1 | hypothetical protein | - |
| LLWM1_RS12065 (LLWM1_03275) | - | 2348483..2348674 (-) | 192 | Protein_2342 | helix-turn-helix domain-containing protein | - |
| LLWM1_RS12070 (LLWM1_2302) | - | 2348934..2349131 (+) | 198 | WP_011677058.1 | hypothetical protein | - |
| LLWM1_RS12075 (LLWM1_03280) | - | 2349135..2349383 (+) | 249 | WP_058221815.1 | hypothetical protein | - |
| LLWM1_RS12080 (LLWM1_2303) | - | 2349498..2349692 (+) | 195 | WP_058221814.1 | DUF1655 domain-containing protein | - |
| LLWM1_RS12085 (LLWM1_2304) | - | 2349696..2350220 (+) | 525 | WP_082225264.1 | hypothetical protein | - |
| LLWM1_RS12090 (LLWM1_2305) | - | 2350217..2350468 (+) | 252 | WP_082225265.1 | helix-turn-helix transcriptional regulator | - |
| LLWM1_RS12095 (LLWM1_2306) | - | 2350465..2350746 (+) | 282 | WP_082225266.1 | hypothetical protein | - |
| LLWM1_RS12100 (LLWM1_2307) | - | 2350789..2351028 (+) | 240 | WP_058221371.1 | hypothetical protein | - |
| LLWM1_RS12105 (LLWM1_2308) | - | 2351025..2351279 (+) | 255 | WP_039114370.1 | hypothetical protein | - |
| LLWM1_RS12110 (LLWM1_2309) | - | 2351276..2351470 (+) | 195 | WP_047687087.1 | hypothetical protein | - |
| LLWM1_RS12115 (LLWM1_2310) | - | 2351457..2351786 (+) | 330 | WP_058221372.1 | hypothetical protein | - |
| LLWM1_RS12120 (LLWM1_2311) | - | 2351790..2352584 (+) | 795 | WP_082225267.1 | bifunctional DNA primase/polymerase | - |
| LLWM1_RS12125 (LLWM1_2312) | - | 2352595..2354229 (+) | 1635 | WP_082225268.1 | phage/plasmid primase, P4 family | - |
| LLWM1_RS12130 (LLWM1_2313) | - | 2354442..2354624 (+) | 183 | WP_003131978.1 | hypothetical protein | - |
| LLWM1_RS12135 (LLWM1_2314) | - | 2354651..2355259 (+) | 609 | WP_003131979.1 | hypothetical protein | - |
| LLWM1_RS12140 (LLWM1_2315) | - | 2355268..2355858 (+) | 591 | WP_003131980.1 | HK97 family phage prohead protease | - |
| LLWM1_RS12145 (LLWM1_2316) | - | 2356072..2356401 (+) | 330 | WP_003131981.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=316490 LLWM1_RS11995 WP_003131953.1 2334578..2335078(-) (ssb) [Lactococcus lactis subsp. lactis strain WM1]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=316490 LLWM1_RS11995 WP_003131953.1 2334578..2335078(-) (ssb) [Lactococcus lactis subsp. lactis strain WM1]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |