Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLWM1_RS08970 Genome accession   NZ_CP032500
Coordinates   1781728..1782717 (-) Length   329 a.a.
NCBI ID   WP_082225240.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain WM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1776728..1787717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLWM1_RS08955 (LLWM1_1722) - 1778094..1779020 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LLWM1_RS08960 (LLWM1_1723) - 1779174..1779857 (-) 684 WP_058221843.1 O-methyltransferase -
  LLWM1_RS08965 (LLWM1_1724) pepF 1779860..1781665 (-) 1806 WP_032398794.1 oligoendopeptidase F Regulator
  LLWM1_RS08970 (LLWM1_1725) coiA 1781728..1782717 (-) 990 WP_082225240.1 competence protein CoiA Machinery gene
  LLWM1_RS08975 (LLWM1_1726) - 1782791..1783876 (-) 1086 WP_003130405.1 YdcF family protein -
  LLWM1_RS08980 (LLWM1_1727) - 1784038..1784886 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  LLWM1_RS08985 (LLWM1_1728) - 1785078..1786499 (-) 1422 WP_058221540.1 NCS2 family permease -
  LLWM1_RS08990 (LLWM1_1729) - 1786806..1787642 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39424.95 Da        Isoelectric Point: 8.2932

>NTDB_id=316468 LLWM1_RS08970 WP_082225240.1 1781728..1782717(-) (coiA) [Lactococcus lactis subsp. lactis strain WM1]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDTIAIEIQCSHLSMKRLKERAENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKIQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYSPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=316468 LLWM1_RS08970 WP_082225240.1 1781728..1782717(-) (coiA) [Lactococcus lactis subsp. lactis strain WM1]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATACAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGGCAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAAATTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATTCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.233

99.088

0.736
  coiA Streptococcus pneumoniae TIGR4

42.857

97.872

0.419
  coiA Streptococcus pneumoniae Rx1

42.857

97.872

0.419
  coiA Streptococcus pneumoniae D39

42.857

97.872

0.419
  coiA Streptococcus pneumoniae R6

42.857

97.872

0.419
  coiA Streptococcus mitis NCTC 12261

42.633

96.96

0.413

Multiple sequence alignment