Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   D4J00_RS06970 Genome accession   NZ_CP032478
Coordinates   1420993..1421970 (-) Length   325 a.a.
NCBI ID   WP_139519868.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK9     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415993..1426970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J00_RS06950 - 1416302..1417234 (-) 933 WP_139519861.1 GDP-L-fucose synthase -
  D4J00_RS06955 gmd 1417227..1418372 (-) 1146 WP_139519863.1 GDP-mannose 4,6-dehydratase -
  D4J00_RS06960 - 1418382..1419800 (-) 1419 WP_139519864.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4J00_RS06965 comB10 1419870..1421000 (-) 1131 WP_139519866.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4J00_RS06970 comB9 1420993..1421970 (-) 978 WP_139519868.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4J00_RS06975 comB8 1421970..1422707 (-) 738 WP_139519870.1 virB8 family protein Machinery gene
  D4J00_RS06980 comB7 1422704..1422817 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4J00_RS06985 comB6 1422833..1423888 (-) 1056 WP_139520044.1 P-type conjugative transfer protein TrbL Machinery gene
  D4J00_RS06990 - 1423896..1424891 (-) 996 WP_139520046.1 PDZ domain-containing protein -
  D4J00_RS06995 - 1424891..1425193 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D4J00_RS07000 panD 1425196..1425549 (-) 354 WP_024368743.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 37259.92 Da        Isoelectric Point: 9.5487

>NTDB_id=316277 D4J00_RS06970 WP_139519868.1 1420993..1421970(-) (comB9) [Helicobacter pylori strain 25-A-EK9]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRY
AMATLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIE
DKNYYSNAFLKPQNKENALENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KGKDE

Nucleotide


Download         Length: 978 bp        

>NTDB_id=316277 D4J00_RS06970 WP_139519868.1 1420993..1421970(-) (comB9) [Helicobacter pylori strain 25-A-EK9]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAACCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTG
ACAAAAACCGCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTAT
GCGATGGCGACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAAT
CTTAGAAAGCAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAGCG
AGGGCAAGATTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAA
GATAAAAATTATTATTCTAACGCTTTTTTGAAGCCCCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAA
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTCTCGGCTAAATGGACTTTAAGGCTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(65-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

96.353

100

0.975

Multiple sequence alignment