Detailed information NTG0316276

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4J00_RS06965
• Genome accession: NZ_CP032478
• Coordinates: 1419870..1421000 (-)
• Length: 376 a.a.
• NCBI ID: WP_139519866.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 25-A-EK9
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1414870..1426000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4J00_RS06945	hypE	1415005..1416003 (+)	999	WP_139519859.1	hydrogenase expression/formation protein HypE	-
D4J00_RS06950	-	1416302..1417234 (-)	933	WP_139519861.1	GDP-L-fucose synthase	-
D4J00_RS06955	gmd	1417227..1418372 (-)	1146	WP_139519863.1	GDP-mannose 4,6-dehydratase	-
D4J00_RS06960	-	1418382..1419800 (-)	1419	WP_139519864.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4J00_RS06965	comB10	1419870..1421000 (-)	1131	WP_139519866.1	DNA type IV secretion system protein ComB10	Machinery gene
D4J00_RS06970	comB9	1420993..1421970 (-)	978	WP_139519868.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4J00_RS06975	comB8	1421970..1422707 (-)	738	WP_139519870.1	virB8 family protein	Machinery gene
D4J00_RS06980	comB7	1422704..1422817 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4J00_RS06985	comB6	1422833..1423888 (-)	1056	WP_139520044.1	P-type conjugative transfer protein TrbL	Machinery gene
D4J00_RS06990	-	1423896..1424891 (-)	996	WP_139520046.1	PDZ domain-containing protein	-
D4J00_RS06995	-	1424891..1425193 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4J00_RS07000	panD	1425196..1425549 (-)	354	WP_024368743.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41991.54 Da
• Isoelectric Point: 9.8624

>NTDB_id=316276 D4J00_RS06965 WP_139519866.1 1419870..1421000(-) (comB10) [Helicobacter pylori strain 25-A-EK9]
MNKWLKGAVVFALGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDPNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=316276 D4J00_RS06965 WP_139519866.1 1419870..1421000(-) (comB10) [Helicobacter pylori strain 25-A-EK9]
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGCACTTGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAAGCTGTTTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.809	100	0.968