Detailed information NTG0316280

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4J00_RS06985
• Genome accession: NZ_CP032478
• Coordinates: 1422833..1423888 (-)
• Length: 351 a.a.
• NCBI ID: WP_139520044.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 25-A-EK9
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1417833..1428888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4J00_RS06960	-	1418382..1419800 (-)	1419	WP_139519864.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4J00_RS06965	comB10	1419870..1421000 (-)	1131	WP_139519866.1	DNA type IV secretion system protein ComB10	Machinery gene
D4J00_RS06970	comB9	1420993..1421970 (-)	978	WP_139519868.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4J00_RS06975	comB8	1421970..1422707 (-)	738	WP_139519870.1	virB8 family protein	Machinery gene
D4J00_RS06980	comB7	1422704..1422817 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4J00_RS06985	comB6	1422833..1423888 (-)	1056	WP_139520044.1	P-type conjugative transfer protein TrbL	Machinery gene
D4J00_RS06990	-	1423896..1424891 (-)	996	WP_139520046.1	PDZ domain-containing protein	-
D4J00_RS06995	-	1424891..1425193 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4J00_RS07000	panD	1425196..1425549 (-)	354	WP_024368743.1	aspartate 1-decarboxylase	-
D4J00_RS07005	-	1425539..1427764 (-)	2226	WP_139519872.1	ATP-dependent Clp protease ATP-binding subunit	-
D4J00_RS07010	-	1427764..1428039 (-)	276	WP_131141690.1	ATP-dependent Clp protease adaptor ClpS	-
D4J00_RS07015	-	1428054..1428467 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39696.70 Da
• Isoelectric Point: 8.8155

>NTDB_id=316280 D4J00_RS06985 WP_139520044.1 1422833..1423888(-) (comB6) [Helicobacter pylori strain 25-A-EK9]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPMHFYELFQNAIFIVPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSISKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=316280 D4J00_RS06985 WP_139520044.1 1422833..1423888(-) (comB6) [Helicobacter pylori strain 25-A-EK9]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCTATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGTGCGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCACTGTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCACTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCGTTAATAGATGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCATTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.726	100	0.957