Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KAN01_RS01065 Genome accession   NZ_CP038816
Coordinates   229352..229936 (+) Length   194 a.a.
NCBI ID   WP_002053972.1    Uniprot ID   A0AA36NV74
Organism   Acinetobacter nosocomialis strain KAN01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 224352..234936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS01040 (KAN01_01040) - 224971..225324 (+) 354 WP_000580161.1 DUF1304 domain-containing protein -
  KAN01_RS01045 (KAN01_01045) - 225377..225718 (+) 342 WP_135924439.1 GlpM family protein -
  KAN01_RS01050 (KAN01_01050) tenA 225769..226443 (-) 675 WP_135924441.1 thiaminase II -
  KAN01_RS01055 (KAN01_01055) - 226707..227789 (+) 1083 WP_002054048.1 DUF475 domain-containing protein -
  KAN01_RS01060 (KAN01_01060) - 227936..229300 (+) 1365 WP_004711530.1 MFS transporter -
  KAN01_RS01065 (KAN01_01065) ssb 229352..229936 (+) 585 WP_002053972.1 single-stranded DNA-binding protein Machinery gene
  KAN01_RS01070 (KAN01_01070) - 229977..230300 (-) 324 WP_006582481.1 AzlD domain-containing protein -
  KAN01_RS01075 (KAN01_01075) - 230297..230992 (-) 696 WP_006582482.1 AzlC family ABC transporter permease -
  KAN01_RS01080 (KAN01_01080) - 231061..231609 (+) 549 WP_006582483.1 helix-turn-helix domain-containing protein -
  KAN01_RS01085 (KAN01_01085) - 231915..233357 (+) 1443 WP_004711533.1 amino acid permease -
  KAN01_RS01090 (KAN01_01090) - 233419..234918 (-) 1500 WP_031953500.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=316059 KAN01_RS01065 WP_002053972.1 229352..229936(+) (ssb) [Acinetobacter nosocomialis strain KAN01]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGGYGGQGG
FGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=316059 KAN01_RS01065 WP_002053972.1 229352..229936(+) (ssb) [Acinetobacter nosocomialis strain KAN01]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGTCAGGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGTGGT
TTCGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGCTGA
TTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36NV74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.746

100

0.526
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

37.563

100

0.381
  ssb Neisseria gonorrhoeae MS11

37.563

100

0.381