Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D5S12_RS23250 Genome accession   NZ_CP032459
Coordinates   5365638..5366201 (-) Length   187 a.a.
NCBI ID   WP_002555458.1    Uniprot ID   -
Organism   Pseudomonas syringae strain CAS02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5360638..5371201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S12_RS23225 (D5S12_24320) - 5360892..5361785 (+) 894 WP_044310365.1 ABC transporter permease subunit -
  D5S12_RS23230 (D5S12_24325) - 5361782..5362888 (+) 1107 WP_003431800.1 ABC transporter ATP-binding protein -
  D5S12_RS23235 (D5S12_24330) - 5362895..5363656 (+) 762 WP_003368990.1 glycerophosphoryl diester phosphodiesterase -
  D5S12_RS23240 (D5S12_24335) - 5363653..5364396 (+) 744 WP_003317091.1 inositol monophosphatase family protein -
  D5S12_RS23245 (D5S12_24340) - 5364396..5365508 (+) 1113 WP_188056866.1 endo-1,4-beta-xylanase -
  D5S12_RS23250 (D5S12_24345) ssb 5365638..5366201 (-) 564 WP_002555458.1 single-stranded DNA-binding protein Machinery gene
  D5S12_RS23255 (D5S12_24350) - 5366211..5367605 (-) 1395 WP_074805340.1 MFS transporter -
  D5S12_RS23260 (D5S12_24355) uvrA 5367735..5370569 (+) 2835 WP_003431812.1 excinuclease ABC subunit UvrA -
  D5S12_RS23265 (D5S12_24360) bfr 5370665..5371129 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20804.92 Da        Isoelectric Point: 5.9404

>NTDB_id=316036 D5S12_RS23250 WP_002555458.1 5365638..5366201(-) (ssb) [Pseudomonas syringae strain CAS02]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
RDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=316036 D5S12_RS23250 WP_002555458.1 5365638..5366201(-) (ssb) [Pseudomonas syringae strain CAS02]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCTCAGGGCGACTCCCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGCCCACAACAATCGGCGCCGCAGCAGTCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTCGACAGCTTCGATGATGATATTCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.974

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.476
  ssb Neisseria meningitidis MC58

45.161

99.465

0.449
  ssb Neisseria gonorrhoeae MS11

45.161

99.465

0.449

Multiple sequence alignment