Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLW34_RS03655 Genome accession   NZ_CP032430
Coordinates   703268..704251 (+) Length   327 a.a.
NCBI ID   WP_021211801.1    Uniprot ID   A0A896TBW3
Organism   Lactococcus cremoris strain W34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 698268..709251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLW34_RS03630 (LLW34_0702) - 698350..699186 (-) 837 WP_205288354.1 HAD family hydrolase -
  LLW34_RS03635 (LLW34_0703) - 699497..700918 (+) 1422 WP_011676727.1 NCS2 family permease -
  LLW34_RS03640 (LLW34_02810) - 701131..701328 (+) 198 WP_250638141.1 alpha/beta hydrolase -
  LLW34_RS03645 (LLW34_0704) - 701367..701954 (+) 588 WP_014572239.1 alpha/beta hydrolase -
  LLW34_RS03650 (LLW34_0705) - 702108..703193 (+) 1086 WP_014572240.1 YdcF family protein -
  LLW34_RS03655 (LLW34_0706) coiA 703268..704251 (+) 984 WP_021211801.1 competence protein CoiA Machinery gene
  LLW34_RS03660 (LLW34_0707) pepF 704326..706131 (+) 1806 WP_021165608.1 oligoendopeptidase F Regulator
  LLW34_RS03665 (LLW34_0708) - 706134..706817 (+) 684 WP_011676723.1 O-methyltransferase -
  LLW34_RS03670 (LLW34_0709) - 706973..707899 (+) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39138.89 Da        Isoelectric Point: 9.6994

>NTDB_id=315809 LLW34_RS03655 WP_021211801.1 703268..704251(+) (coiA) [Lactococcus cremoris strain W34]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSLK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLIDFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=315809 LLW34_RS03655 WP_021211801.1 703268..704251(+) (coiA) [Lactococcus cremoris strain W34]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACTAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAGATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAAAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

96.636

100

0.966
  coiA Streptococcus mitis NCTC 12261

44.136

99.083

0.437
  coiA Streptococcus pneumoniae TIGR4

43.519

99.083

0.431
  coiA Streptococcus pneumoniae Rx1

43.519

99.083

0.431
  coiA Streptococcus pneumoniae D39

43.519

99.083

0.431
  coiA Streptococcus pneumoniae R6

43.519

99.083

0.431

Multiple sequence alignment