Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   TFGB2_RS12535 Genome accession   NZ_CP032429
Coordinates   2110861..2111292 (-) Length   143 a.a.
NCBI ID   WP_050170900.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TFG-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105861..2116292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGB2_RS12500 (TFGB2_02201) pilA 2106500..2107753 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  TFGB2_RS13520 - 2107830..2108003 (-) 174 WP_169300794.1 hypothetical protein -
  TFGB2_RS12505 (TFGB2_02202) - 2108017..2108696 (-) 680 Protein_2141 opacity family porin -
  TFGB2_RS12515 (TFGB2_02203) pilE 2109296..2109805 (-) 510 WP_134797946.1 pilin Machinery gene
  TFGB2_RS12520 - 2110174..2110317 (-) 144 WP_003691943.1 hypothetical protein -
  TFGB2_RS14195 - 2110620..2110723 (-) 104 Protein_2144 pilin -
  TFGB2_RS12535 (TFGB2_02204) pilE 2110861..2111292 (-) 432 WP_050170900.1 pilin Machinery gene
  TFGB2_RS12540 (TFGB2_02205) lpxC 2111399..2112322 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  TFGB2_RS12545 (TFGB2_02206) - 2112683..2112913 (-) 231 Protein_2147 hypothetical protein -
  TFGB2_RS12550 (TFGB2_02207) - 2112910..2113653 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  TFGB2_RS12555 (TFGB2_02208) gmhB 2113683..2114246 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  TFGB2_RS12560 (TFGB2_02209) - 2114389..2116041 (+) 1653 WP_003690371.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15472.32 Da        Isoelectric Point: 9.4144

>NTDB_id=315796 TFGB2_RS12535 WP_050170900.1 2110861..2111292(-) (pilE) [Neisseria gonorrhoeae strain TFG-B2]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPKDNTSAGVASSSSIKGKYVKEVEVKNGVVTAEMKSDGVNKEIK
GKRLSLWARRENGSVKWFCGQPVKRDAGAKTGADDVKADGKDTDKINTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=315796 TFGB2_RS12535 WP_050170900.1 2110861..2111292(-) (pilE) [Neisseria gonorrhoeae strain TFG-B2]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCA
AATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGC
CGGCGCCAAAACCGGCGCCGACGACGTCAAAGCCGACGGCAAAGACACCGACAAAATCAACACCAAGCACCTGCCGTCAA
CCTGCCGCGATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.528

100

0.72
  pilE Neisseria gonorrhoeae strain FA1090

67.606

99.301

0.671

Multiple sequence alignment