Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D3880_RS02960 | Genome accession | NZ_CP032419 |
| Coordinates | 636019..636504 (+) | Length | 161 a.a. |
| NCBI ID | WP_119892036.1 | Uniprot ID | A0A385YYL1 |
| Organism | Pseudomonas cavernae strain K2W31S-8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 631019..641504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3880_RS02945 (D3880_02945) | bfr | 631114..631578 (+) | 465 | WP_119892034.1 | bacterioferritin | - |
| D3880_RS02950 (D3880_02950) | uvrA | 631644..634478 (-) | 2835 | WP_119895650.1 | excinuclease ABC subunit UvrA | - |
| D3880_RS02955 (D3880_02955) | - | 634613..636001 (+) | 1389 | WP_119892035.1 | MFS transporter | - |
| D3880_RS02960 (D3880_02960) | ssb | 636019..636504 (+) | 486 | WP_119892036.1 | single-stranded DNA-binding protein | Machinery gene |
| D3880_RS02965 (D3880_02965) | - | 636520..637404 (+) | 885 | WP_119892037.1 | sugar nucleotide-binding protein | - |
| D3880_RS02970 (D3880_02970) | - | 637397..638326 (+) | 930 | WP_119892038.1 | NAD-dependent epimerase/dehydratase family protein | - |
| D3880_RS02975 (D3880_02975) | - | 638379..639044 (-) | 666 | WP_119892039.1 | OmpW/AlkL family protein | - |
| D3880_RS02980 (D3880_02980) | - | 639183..639701 (-) | 519 | WP_119892040.1 | DUF3299 domain-containing protein | - |
| D3880_RS02985 (D3880_02985) | - | 639712..641118 (-) | 1407 | WP_119892041.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17816.75 Da Isoelectric Point: 5.3111
>NTDB_id=315694 D3880_RS02960 WP_119892036.1 636019..636504(+) (ssb) [Pseudomonas cavernae strain K2W31S-8]
MARGVNKVILLGNVGGDPETRYLPNGNAVTNITLATSDSWKDKQTGQQQERTEWHRVVFFGKLAEIAGEYLRKGSQVYVE
GRLQTREWEKDGVKRYTTEIVVDMNGSMQLLGGRGGADEGAPRPSRPQQSQPARESRPAPQPQAAAQPAPDYDSFDDDIP
F
MARGVNKVILLGNVGGDPETRYLPNGNAVTNITLATSDSWKDKQTGQQQERTEWHRVVFFGKLAEIAGEYLRKGSQVYVE
GRLQTREWEKDGVKRYTTEIVVDMNGSMQLLGGRGGADEGAPRPSRPQQSQPARESRPAPQPQAAAQPAPDYDSFDDDIP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=315694 D3880_RS02960 WP_119892036.1 636019..636504(+) (ssb) [Pseudomonas cavernae strain K2W31S-8]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGCTCGGTAACGTCGGTGGCGATCCGGAAACCCGTTACCTGCCCAACGGCAA
TGCCGTCACCAACATCACCCTGGCCACCAGCGACAGCTGGAAGGACAAGCAGACCGGCCAACAGCAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCAAGCTCGCCGAGATCGCCGGTGAATACCTGCGCAAGGGCTCGCAGGTGTATGTCGAG
GGTCGTCTGCAGACCCGCGAGTGGGAGAAAGACGGCGTCAAGCGCTACACCACCGAGATCGTCGTCGACATGAACGGCAG
CATGCAGCTGCTCGGTGGCCGTGGTGGTGCCGACGAAGGCGCGCCACGTCCGTCCCGTCCGCAGCAGTCGCAGCCGGCGC
GTGAATCGCGTCCGGCCCCGCAGCCACAAGCGGCCGCGCAGCCGGCGCCGGACTACGACAGCTTCGACGACGACATCCCA
TTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGCTCGGTAACGTCGGTGGCGATCCGGAAACCCGTTACCTGCCCAACGGCAA
TGCCGTCACCAACATCACCCTGGCCACCAGCGACAGCTGGAAGGACAAGCAGACCGGCCAACAGCAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCAAGCTCGCCGAGATCGCCGGTGAATACCTGCGCAAGGGCTCGCAGGTGTATGTCGAG
GGTCGTCTGCAGACCCGCGAGTGGGAGAAAGACGGCGTCAAGCGCTACACCACCGAGATCGTCGTCGACATGAACGGCAG
CATGCAGCTGCTCGGTGGCCGTGGTGGTGCCGACGAAGGCGCGCCACGTCCGTCCCGTCCGCAGCAGTCGCAGCCGGCGC
GTGAATCGCGTCCGGCCCCGCAGCCACAAGCGGCCGCGCAGCCGGCGCCGGACTACGACAGCTTCGACGACGACATCCCA
TTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.386 |
100 |
0.627 |
| ssb | Neisseria gonorrhoeae MS11 |
47.486 |
100 |
0.528 |
| ssb | Glaesserella parasuis strain SC1401 |
46.961 |
100 |
0.528 |
| ssb | Neisseria meningitidis MC58 |
46.328 |
100 |
0.509 |