Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   D3873_RS00585 Genome accession   NZ_CP032418
Coordinates   107513..109267 (+) Length   584 a.a.
NCBI ID   WP_119882183.1    Uniprot ID   A0A385YRR5
Organism   Paenisporosarcina cavernae strain K2R23-3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 102513..114267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3873_RS00560 (D3873_00560) - 102571..102924 (-) 354 WP_119882178.1 YciI family protein -
  D3873_RS00565 (D3873_00565) - 102950..103393 (-) 444 WP_119882179.1 GNAT family N-acetyltransferase -
  D3873_RS00570 (D3873_00570) - 103564..104049 (+) 486 WP_119882180.1 DUF4825 domain-containing protein -
  D3873_RS00575 (D3873_00575) helD 104367..106667 (+) 2301 WP_119882181.1 RNA polymerase recycling motor HelD -
  D3873_RS00580 (D3873_00580) - 107022..107444 (+) 423 WP_119882182.1 MarR family winged helix-turn-helix transcriptional regulator -
  D3873_RS00585 (D3873_00585) rcrP 107513..109267 (+) 1755 WP_119882183.1 ABC transporter ATP-binding protein Regulator
  D3873_RS00590 (D3873_00590) rcrQ 109260..111047 (+) 1788 WP_119882184.1 ABC transporter ATP-binding protein Regulator
  D3873_RS00595 (D3873_00595) - 111594..113504 (+) 1911 WP_119882185.1 PhoX family protein -
  D3873_RS00600 (D3873_00600) - 113638..114081 (+) 444 WP_238473798.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64583.30 Da        Isoelectric Point: 5.2988

>NTDB_id=315660 D3873_RS00585 WP_119882183.1 107513..109267(+) (rcrP) [Paenisporosarcina cavernae strain K2R23-3]
MLKLLSYLQRKEWTFIAFSVMFIVLQVWLDLKLPDYMFKITMLVQTPGSETGEVLDQGVFMLLCAIGSMAAAIVTSFFAA
QVAAGFSLRLRRLVFDRTLSFSMEEMNRFSTPSLITRSTNDITQVQLLIATGLQVIVKAPILAVWAIFKITGKSWEWSAA
TGVAVALLIAVLLVIVLVALPKFRIIQTLTDNLNRVTRENLSGIRVVHAYNAEGFEEQKFEVANEELTRTNLFTMRTMAI
LMPTIGFIMSGISLAIYWIGAFLIQAASGPEKLTIFSNMVVFSSYAMQVIMAFMMLSIIFILLPRAAVSAKRIQEVLATK
AMILPGNEVQGKPGIKGKVEFHNVTFRYPDAAEAILENISFTASLGETVAIIGSTGSGKSTLVNLIPRFFDVTEGEILVD
GVDVRNYTKEALHSKIGFVSQKAELFSGSVKSNVAFGDTSIEEDMLKKALEIAQAADFVEKMEERYEAPISQSGTNLSGG
QKQRLSIARAIYKQPEIYVFDDSFSALDYKTDRVLRSLLKQEISDATSIIVAQRIGTIKDADRILVLDEGKLVGTGTHEE
LMETCDVYQEIAYSQLSKEELANG

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=315660 D3873_RS00585 WP_119882183.1 107513..109267(+) (rcrP) [Paenisporosarcina cavernae strain K2R23-3]
ATGCTGAAATTGTTATCGTATTTGCAGCGCAAAGAATGGACATTTATCGCCTTTAGTGTGATGTTCATCGTGCTACAAGT
GTGGCTAGATTTAAAACTTCCAGATTATATGTTCAAAATTACGATGCTTGTTCAAACGCCTGGAAGTGAAACGGGGGAAG
TGCTAGATCAAGGGGTATTCATGCTCTTATGTGCAATCGGTAGTATGGCAGCTGCGATTGTGACGAGCTTTTTTGCAGCT
CAAGTAGCGGCTGGTTTTTCGTTGCGATTGCGCCGACTCGTGTTTGACCGAACGTTAAGTTTTTCGATGGAGGAAATGAA
TCGATTCTCTACACCAAGTCTTATCACACGTTCGACGAATGATATTACGCAAGTGCAGTTACTCATTGCCACAGGGCTTC
AAGTAATTGTGAAAGCACCGATTTTAGCGGTGTGGGCGATTTTTAAAATTACCGGTAAGAGCTGGGAGTGGAGTGCGGCT
ACTGGTGTGGCGGTTGCGCTTCTTATCGCAGTGTTACTCGTCATCGTGCTTGTCGCTTTACCGAAATTCCGAATTATTCA
AACGCTTACCGATAATTTGAACCGTGTAACTCGGGAGAATTTGTCTGGAATTCGTGTCGTACATGCCTATAATGCGGAAG
GCTTTGAAGAACAAAAATTCGAAGTGGCAAATGAGGAATTGACACGCACGAATTTGTTTACGATGCGCACAATGGCGATC
CTTATGCCGACGATAGGCTTCATCATGTCGGGAATTAGTCTCGCGATTTACTGGATTGGAGCGTTTTTGATTCAAGCAGC
GTCAGGACCAGAAAAACTGACGATTTTCTCGAATATGGTCGTCTTCTCTTCCTATGCAATGCAAGTAATTATGGCATTTA
TGATGCTGTCGATTATTTTCATTTTACTTCCACGTGCAGCGGTCTCCGCAAAACGTATCCAAGAAGTATTAGCAACAAAA
GCAATGATTTTACCTGGGAATGAAGTGCAAGGTAAGCCCGGCATAAAAGGAAAAGTAGAGTTTCACAATGTGACGTTCCG
TTACCCAGATGCAGCAGAAGCGATTTTAGAAAATATTAGTTTTACTGCCTCGTTAGGTGAAACGGTCGCGATCATTGGGT
CAACAGGCAGTGGGAAGAGTACGCTCGTCAATTTAATTCCTCGCTTTTTCGACGTAACAGAAGGAGAGATACTAGTTGAC
GGAGTAGATGTCCGGAACTATACGAAAGAGGCCCTTCATTCCAAAATAGGGTTTGTCTCACAAAAAGCGGAGTTATTCTC
TGGTTCTGTGAAATCAAACGTGGCATTTGGCGATACATCGATTGAAGAAGATATGCTGAAAAAAGCGCTGGAAATTGCGC
AAGCAGCTGACTTTGTAGAAAAAATGGAAGAGCGCTATGAAGCGCCTATTTCTCAAAGTGGAACGAATTTGTCGGGTGGG
CAAAAGCAGCGTCTGTCAATTGCGAGAGCGATTTACAAGCAACCTGAAATTTATGTATTTGATGATTCGTTTTCCGCGCT
CGATTATAAAACGGATCGTGTATTGCGTTCGTTGTTGAAGCAAGAAATTTCAGATGCGACGTCGATTATTGTGGCACAAC
GAATTGGAACGATTAAAGACGCGGACCGAATTTTAGTATTAGATGAAGGAAAACTTGTCGGCACCGGAACACACGAGGAA
TTAATGGAAACGTGTGACGTGTATCAAGAGATTGCATATTCGCAATTGTCGAAGGAGGAGCTCGCAAATGGCTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.753

100

0.531

Multiple sequence alignment