Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D3X10_RS16715 Genome accession   NZ_CP032415
Coordinates   3508655..3509371 (+) Length   238 a.a.
NCBI ID   WP_044735256.1    Uniprot ID   -
Organism   Shewanella algae strain VGH117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3503655..3514371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3X10_RS16700 (D3X10_16765) - 3503851..3504201 (-) 351 WP_129586019.1 hypothetical protein -
  D3X10_RS16705 (D3X10_16770) uvrA 3504209..3507031 (-) 2823 WP_117199998.1 excinuclease ABC subunit UvrA -
  D3X10_RS16710 (D3X10_16775) - 3507253..3508620 (+) 1368 WP_025887974.1 MFS transporter -
  D3X10_RS16715 (D3X10_16780) ssb 3508655..3509371 (+) 717 WP_044735256.1 single-stranded DNA-binding protein Machinery gene
  D3X10_RS16720 (D3X10_16790) fdnG 3510257..3513271 (+) 3015 WP_109247074.1 formate dehydrogenase-N subunit alpha -
  D3X10_RS16725 (D3X10_16795) fdxH 3513274..3514197 (+) 924 WP_025887978.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26172.53 Da        Isoelectric Point: 5.9130

>NTDB_id=315631 D3X10_RS16715 WP_044735256.1 3508655..3509371(+) (ssb) [Shewanella algae strain VGH117]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=315631 D3X10_RS16715 WP_044735256.1 3508655..3509371(+) (ssb) [Shewanella algae strain VGH117]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCACAACAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAACAACAGGCTGCTCCGCAGCAGCGTCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.383

98.739

0.458
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408

Multiple sequence alignment