Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D4A92_RS17445 Genome accession   NZ_CP032405
Coordinates   3547575..3548120 (-) Length   181 a.a.
NCBI ID   WP_006727710.1    Uniprot ID   K2Q2L3
Organism   Rhizobium rosettiformans strain MAE2-X     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3542575..3553120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A92_RS17425 - 3543046..3543204 (+) 159 WP_203016157.1 hypothetical protein -
  D4A92_RS17430 - 3543288..3543440 (+) 153 WP_157790736.1 hypothetical protein -
  D4A92_RS25255 - 3543500..3543634 (+) 135 WP_006727707.1 hypothetical protein -
  D4A92_RS17435 (D4A92_17410) gyrA 3543807..3546626 (-) 2820 WP_203016159.1 DNA gyrase subunit A -
  D4A92_RS17440 (D4A92_17415) - 3546822..3547451 (+) 630 WP_006727709.1 MarC family protein -
  D4A92_RS17445 (D4A92_17420) ssb 3547575..3548120 (-) 546 WP_006727710.1 single-stranded DNA-binding protein Machinery gene
  D4A92_RS17450 (D4A92_17425) uvrA 3548389..3551310 (+) 2922 WP_203016161.1 excinuclease ABC subunit UvrA -
  D4A92_RS17455 (D4A92_17430) - 3551314..3551640 (+) 327 WP_203016162.1 DUF4258 domain-containing protein -
  D4A92_RS17460 (D4A92_17435) - 3551637..3551894 (+) 258 WP_203016163.1 hypothetical protein -
  D4A92_RS17465 (D4A92_17440) - 3551891..3552694 (+) 804 WP_203016164.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18866.59 Da        Isoelectric Point: 5.9441

>NTDB_id=315547 D4A92_RS17445 WP_006727710.1 3547575..3548120(-) (ssb) [Rhizobium rosettiformans strain MAE2-X]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDKNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGSTVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFNGNLTMLGGRGDGGGASRGGNDFGGADYGGGGGGYDGGYGSPAPSRGGASGGA
SRGGSAPSGGFSRDLDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=315547 D4A92_RS17445 WP_006727710.1 3547575..3548120(-) (ssb) [Rhizobium rosettiformans strain MAE2-X]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGATCGGCAATCTCGGTGCCGATCCCGAAATTCGCCGGACCCAGGACGGCCG
GCCGATCGCCAACCTGCGCATCGCGACGTCGGAAACCTGGCGCGACAAGAACAGCGGCGAACGCAAGGAAAAGACCGAAT
GGCATTCGGTCGTGATCTTCAACGAAGGTCTCTGCAAGGTCGCCGAACAGTATCTGAAGAAGGGCTCGACCGTTTACATC
GAAGGCCAGCTCCAGACCCGCAAGTGGCAGGACCAGAGCGGCGCCGACCGTTATTCGACGGAAGTCGTTCTGCAGGGCTT
CAACGGCAATCTGACCATGCTCGGCGGTCGCGGTGATGGCGGCGGAGCCTCGCGTGGCGGCAATGACTTCGGCGGTGCCG
ATTACGGTGGCGGCGGTGGTGGCTATGACGGCGGTTACGGTTCGCCGGCGCCTTCGCGTGGCGGCGCGTCGGGCGGCGCA
AGCCGTGGCGGCAGCGCTCCTTCCGGCGGCTTCTCACGTGACCTGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2Q2L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.056

98.343

0.541
  ssb Glaesserella parasuis strain SC1401

45.503

100

0.475
  ssb Neisseria gonorrhoeae MS11

40.426

100

0.42
  ssb Neisseria meningitidis MC58

40.426

100

0.42

Multiple sequence alignment