Detailed information NTG0031522

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: LFERR_RS00680
• Genome accession: NC_011206
• Coordinates: 129170..129664 (+)
• Length: 164 a.a.
• NCBI ID: WP_012535817.1
• Uniprot ID: -
• Organism: Acidithiobacillus ferrooxidans ATCC 53993
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	121095..135074	129170..129664	within	0

Gene organization within MGE regions

Location: 121095..135074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFERR_RS00625 (Lferr_0128)	-	121095..122675 (+)	1581	WP_012535805.1	recombinase family protein	-
LFERR_RS00630 (Lferr_0129)	-	122703..122993 (-)	291	WP_012535806.1	hypothetical protein	-
LFERR_RS00635 (Lferr_0131)	-	123085..123309 (-)	225	WP_012535808.1	hypothetical protein	-
LFERR_RS00640 (Lferr_0132)	-	123504..123794 (+)	291	WP_012535809.1	hypothetical protein	-
LFERR_RS00645 (Lferr_0133)	-	123791..124138 (+)	348	WP_012535810.1	hypothetical protein	-
LFERR_RS14340 (Lferr_0134)	-	124221..124667 (-)	447	WP_230456321.1	helix-turn-helix domain-containing protein	-
LFERR_RS16070	-	124739..124993 (+)	255	WP_413428971.1	Cro/CI family transcriptional regulator	-
LFERR_RS00660 (Lferr_0136)	-	125167..126162 (+)	996	WP_230456322.1	YdaU family protein	-
LFERR_RS00665 (Lferr_0137)	-	126173..127027 (+)	855	WP_012535814.1	ATP-binding protein	-
LFERR_RS00670 (Lferr_0138)	-	127024..128220 (+)	1197	WP_012535815.1	hypothetical protein	-
LFERR_RS00675 (Lferr_0139)	-	128217..129107 (+)	891	WP_012535816.1	DNA adenine methylase	-
LFERR_RS00680 (Lferr_0140)	ssb	129170..129664 (+)	495	WP_012535817.1	single-stranded DNA-binding protein	Machinery gene
LFERR_RS00685 (Lferr_0141)	-	130607..131524 (-)	918	WP_049756708.1	hypothetical protein	-
LFERR_RS00690 (Lferr_0142)	-	131809..133446 (-)	1638	WP_012535819.1	hypothetical protein	-
LFERR_RS14705 (Lferr_0143)	-	133473..135074 (-)	1602	WP_012535820.1	TnsD family Tn7-like transposition protein	-

Sequence

Protein

• Length: 164 a.a.
• Molecular weight: 18269.47 Da
• Isoelectric Point: 6.7279

>NTDB_id=31522 LFERR_RS00680 WP_012535817.1 129170..129664(+) (ssb) [Acidithiobacillus ferrooxidans ATCC 53993]
MAGVNKVILLGHLGRDPEMRYMPDGTAVANMTIATSESYKDRDGNRQERTEWHRVALFARTAEVAGEFLRKGSQAYIEGR
IRTRKWTDKDGQERYSTEIVGDRLQLIGGRCDGADGGNPAPQHGGGGGGDMGAAPMEEFDDDIPFITKAETIFQPRWRLP
RVRF

Nucleotide

• Length: 495 bp

>NTDB_id=31522 LFERR_RS00680 WP_012535817.1 129170..129664(+) (ssb) [Acidithiobacillus ferrooxidans ATCC 53993]
ATGGCAGGAGTGAATAAAGTGATCTTGTTGGGCCATCTGGGGCGAGACCCGGAGATGCGGTACATGCCAGACGGGACGGC
GGTCGCCAATATGACCATCGCCACGTCGGAGTCCTACAAGGATCGGGACGGCAACCGCCAGGAGCGTACCGAGTGGCACC
GCGTTGCACTCTTCGCGAGGACGGCGGAAGTCGCCGGTGAATTTTTGCGCAAGGGGAGCCAGGCGTACATCGAAGGGCGT
ATCCGCACCAGAAAATGGACCGATAAGGACGGTCAGGAGCGGTATTCCACGGAGATCGTGGGCGACCGGCTCCAGTTGAT
CGGTGGGCGCTGTGACGGGGCCGATGGTGGCAATCCAGCGCCACAGCATGGTGGTGGGGGTGGCGGGGACATGGGGGCTG
CACCGATGGAGGAATTTGACGACGATATTCCGTTTATCACCAAGGCGGAAACTATCTTTCAACCACGCTGGCGGCTTCCG
CGAGTGCGGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-106)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	50.289	100	0.53
ssb	Glaesserella parasuis strain SC1401	47.222	100	0.518
ssb	Neisseria meningitidis MC58	42.775	100	0.451
ssb	Neisseria gonorrhoeae MS11	42.775	100	0.451