Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CTI32_RS13155 Genome accession   NZ_CP032308
Coordinates   2314511..2316319 (-) Length   602 a.a.
NCBI ID   WP_119365137.1    Uniprot ID   -
Organism   Enterococcus faecium strain HY07     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2309511..2321319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTI32_RS13130 (CTI32_13130) - 2310558..2311457 (-) 900 WP_002335218.1 RluA family pseudouridine synthase -
  CTI32_RS13135 (CTI32_13135) - 2311459..2312256 (-) 798 WP_002309983.1 NAD kinase -
  CTI32_RS13140 (CTI32_13140) - 2312231..2312938 (-) 708 WP_002309982.1 GTP pyrophosphokinase family protein -
  CTI32_RS13145 (CTI32_13145) - 2313069..2313644 (+) 576 WP_002314142.1 CYTH domain-containing protein -
  CTI32_RS13150 (CTI32_13150) - 2313762..2314439 (+) 678 WP_002309978.1 ClpXP adapter SpxH family protein -
  CTI32_RS13155 (CTI32_13155) pepF 2314511..2316319 (-) 1809 WP_119365137.1 oligoendopeptidase F Regulator
  CTI32_RS13160 (CTI32_13160) - 2316499..2317498 (-) 1000 Protein_2186 competence protein CoiA family protein -
  CTI32_RS13165 (CTI32_13165) - 2317596..2318249 (-) 654 WP_002309970.1 adaptor protein MecA -
  CTI32_RS13170 (CTI32_13170) spxA 2318580..2318978 (-) 399 WP_002296384.1 transcriptional regulator SpxA -
  CTI32_RS13175 (CTI32_13175) - 2319743..2320450 (+) 708 WP_002309968.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69729.11 Da        Isoelectric Point: 4.7352

>NTDB_id=314842 CTI32_RS13155 WP_119365137.1 2314511..2316319(-) (pepF) [Enterococcus faecium strain HY07]
MEVKQLPKREELPENLTWDLTKIFSSDKEFDEKYLELSEKLKKSEKYKGTLNQGASQFLDAIEFVLSVYRQTEIIYVYAH
LKNDQDTGNTEYQALYARASSLFSKVSEAVSWFEPEILQLSDERIWQYFKEEPKLEVYRHYIQQIVDNRAHVLSADQESL
LAGAGEIFEASSDTFAVLNNADLVFPTIEGENGEKVQLSHGVYGQLLESTDRSVREAAFKGLYSVYEQFRNTFASTLSTH
IKGHNFKAKVRNYSSAREASLSNNHIPESVYDTLVDVVNKHLPLLHRYMELRKRLLEVEKLHMYDLYTPVLGEAPITFTY
EEAKEKALEALKPMGEEYMTIVEKAFSERWIDVVENKGKRSGAYSSGSYDTNPYILLNWHDTLDQLFTLVHEMGHSVHSY
FTRSSQPYVYGDYSIFLAEIASTTNENILTEYLLETEKDPRVRAYVFNHYLDGFKGTVFRQTQFAEFEHFMHTEDEKGVP
LTSEYLSDSYGKLNAKYYGPAVEEDPEIKFEWSRIPHFYYNYYVFQYSTGFSAASALAKRILSQEPDALENYLAYLKAGN
SDYPVEVMKKAGVDMTQAAYIEDAMSMFEQRLNELEELIDRL

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=314842 CTI32_RS13155 WP_119365137.1 2314511..2316319(-) (pepF) [Enterococcus faecium strain HY07]
ATGGAAGTAAAGCAGTTGCCAAAACGCGAAGAATTGCCTGAAAATTTAACTTGGGACTTGACCAAGATCTTTTCAAGCGA
CAAAGAATTTGATGAGAAATATCTAGAATTATCAGAAAAGTTAAAAAAATCTGAAAAATATAAAGGAACACTTAATCAAG
GCGCTTCTCAATTTCTTGATGCGATTGAATTTGTGTTGAGTGTTTATCGCCAAACCGAAATCATTTATGTCTATGCACAC
CTTAAAAACGATCAAGATACTGGGAATACAGAATATCAAGCGCTTTATGCAAGAGCAAGTAGTTTGTTTTCAAAGGTTAG
TGAAGCTGTTTCCTGGTTTGAACCAGAAATATTGCAGTTATCAGATGAACGGATTTGGCAATATTTCAAAGAAGAACCGA
AGTTAGAAGTCTATCGTCACTATATCCAGCAAATAGTAGATAATCGTGCCCATGTTTTATCTGCCGATCAGGAATCGCTT
CTTGCAGGAGCAGGAGAAATCTTTGAGGCTTCAAGTGATACATTTGCTGTTTTGAATAATGCAGATTTAGTTTTCCCAAC
GATCGAAGGAGAGAATGGTGAAAAAGTCCAATTATCTCATGGTGTGTACGGTCAGTTGCTAGAAAGCACGGATCGAAGTG
TTCGCGAAGCCGCATTTAAAGGGTTGTACAGTGTTTATGAGCAATTTAGAAATACGTTTGCTTCTACTTTAAGTACGCAT
ATAAAAGGACATAATTTTAAAGCAAAAGTTCGTAATTACAGCTCTGCCAGAGAAGCATCTTTGAGCAATAATCACATTCC
TGAAAGTGTATACGACACTTTGGTAGATGTAGTAAACAAGCATTTGCCTTTGCTGCATCGATATATGGAATTACGGAAAC
GTTTATTAGAAGTGGAAAAACTGCACATGTACGATCTTTATACACCGGTCTTAGGAGAAGCTCCAATCACCTTTACGTAT
GAAGAAGCAAAAGAGAAAGCTTTGGAAGCACTGAAGCCAATGGGCGAAGAGTACATGACTATTGTAGAAAAAGCATTCTC
TGAACGTTGGATCGATGTTGTCGAAAATAAAGGAAAACGAAGTGGTGCCTATTCTTCGGGAAGCTATGACACAAATCCAT
ATATTTTATTGAATTGGCATGATACATTGGATCAATTGTTTACGCTTGTCCACGAAATGGGACATAGTGTCCACAGTTAT
TTCACACGATCGAGCCAACCTTATGTATACGGTGACTACTCCATCTTTTTAGCAGAAATAGCTTCGACAACGAACGAAAA
TATCCTAACAGAATATTTATTGGAAACAGAAAAAGACCCTCGCGTCCGAGCTTATGTGTTCAACCATTACTTGGATGGAT
TTAAAGGAACAGTTTTCCGCCAGACACAATTTGCTGAATTCGAGCACTTCATGCATACGGAAGATGAAAAAGGTGTGCCA
TTGACTAGTGAATATCTAAGTGATAGTTATGGTAAATTGAATGCAAAATATTATGGTCCGGCAGTCGAAGAAGACCCAGA
AATCAAATTTGAATGGTCACGGATCCCGCATTTTTACTATAATTACTATGTCTTCCAATACTCGACTGGTTTTTCTGCTG
CTTCAGCGTTGGCGAAAAGAATACTTAGTCAGGAACCAGATGCGCTAGAGAACTATTTGGCTTATCTAAAAGCTGGTAAC
AGTGATTATCCTGTTGAAGTGATGAAAAAAGCAGGAGTAGATATGACACAGGCTGCGTATATCGAAGATGCAATGTCGAT
GTTTGAACAACGACTAAACGAATTAGAAGAATTGATTGATCGTTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-586)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.481

98.505

0.547

Multiple sequence alignment