Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | CDG62_RS04175 | Genome accession | NZ_CP032286 |
| Coordinates | 302475..303131 (+) | Length | 218 a.a. |
| NCBI ID | WP_087527294.1 | Uniprot ID | A0A385N5S1 |
| Organism | Acinetobacter sp. WCHA55 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 297475..308131
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDG62_RS04160 (CDG62_04165) | - | 297885..298691 (+) | 807 | WP_087527291.1 | putative RNA methyltransferase | - |
| CDG62_RS04165 (CDG62_04170) | ponA | 298723..301251 (-) | 2529 | WP_087527292.1 | penicillin-binding protein PBP1a | - |
| CDG62_RS04170 (CDG62_04175) | pilM | 301417..302475 (+) | 1059 | WP_087527293.1 | pilus assembly protein PilM | Machinery gene |
| CDG62_RS04175 (CDG62_04180) | pilN | 302475..303131 (+) | 657 | WP_087527294.1 | PilN domain-containing protein | Machinery gene |
| CDG62_RS04180 (CDG62_04185) | pilO | 303128..303865 (+) | 738 | WP_087527295.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CDG62_RS04185 (CDG62_04190) | pilP | 303865..304392 (+) | 528 | WP_087527296.1 | pilus assembly protein PilP | Machinery gene |
| CDG62_RS04190 (CDG62_04195) | pilQ | 304411..306489 (+) | 2079 | WP_087527297.1 | type IV pilus secretin PilQ | Machinery gene |
| CDG62_RS04195 (CDG62_04200) | - | 306578..307060 (+) | 483 | WP_265088291.1 | shikimate kinase | - |
Sequence
Protein
Download Length: 218 a.a. Molecular weight: 24178.61 Da Isoelectric Point: 5.1439
>NTDB_id=314730 CDG62_RS04175 WP_087527294.1 302475..303131(+) (pilN) [Acinetobacter sp. WCHA55]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWLFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVGPDATTPEAASTVNNSTAGAAQ
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWLFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVGPDATTPEAASTVNNSTAGAAQ
Nucleotide
Download Length: 657 bp
>NTDB_id=314730 CDG62_RS04175 WP_087527294.1 302475..303131(+) (pilN) [Acinetobacter sp. WCHA55]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCATATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTAGCTTGGTTGTTTTACAGTCAAAAACTTGAAGATCAAGAACAGGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTTCAACTAAAGTCATTGGAAGGTCTACAAGAGCAGCGCAATGCG
ATTGTTGAGCGGATGAAGTTGATCCAAGGTTTACAAGGTCAACGTCCTGTAGCAGTTCGTTTGGTCGATGAAATGGTACG
TGTTACTCCAAGTAATATGTACATTACTAAGTTTGTACGCACGGGCGATAAATTTACCATTGAAGGGAAAGCCGAAAGCC
CGAATACAGTTGCGGAATTTTTACGTAACCTAGAGGCATCGGCGTGGTATCGTAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGCTCCATTGTGCCGCGTGTTGAAGAAACCTATGGCACCTTTGTTGTAACAGC
AGATTTAGATGAGATTGCTCAGCCAGTAGGGCCTGATGCGACCACACCTGAAGCAGCAAGCACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCATATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTAGCTTGGTTGTTTTACAGTCAAAAACTTGAAGATCAAGAACAGGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTTCAACTAAAGTCATTGGAAGGTCTACAAGAGCAGCGCAATGCG
ATTGTTGAGCGGATGAAGTTGATCCAAGGTTTACAAGGTCAACGTCCTGTAGCAGTTCGTTTGGTCGATGAAATGGTACG
TGTTACTCCAAGTAATATGTACATTACTAAGTTTGTACGCACGGGCGATAAATTTACCATTGAAGGGAAAGCCGAAAGCC
CGAATACAGTTGCGGAATTTTTACGTAACCTAGAGGCATCGGCGTGGTATCGTAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGCTCCATTGTGCCGCGTGTTGAAGAAACCTATGGCACCTTTGTTGTAACAGC
AGATTTAGATGAGATTGCTCAGCCAGTAGGGCCTGATGCGACCACACCTGAAGCAGCAAGCACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Acinetobacter baumannii D1279779 |
69.378 |
95.872 |
0.665 |
| comN | Acinetobacter baylyi ADP1 |
74.093 |
88.532 |
0.656 |