Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BEN74_RS11660 Genome accession   NZ_CP032279
Coordinates   2106197..2106778 (+) Length   193 a.a.
NCBI ID   WP_068911538.1    Uniprot ID   A0A3B7PTT1
Organism   Acinetobacter sp. WCHAc010034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2101197..2111778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS11645 (BEN74_11645) - 2103020..2103379 (+) 360 WP_068911542.1 hypothetical protein -
  BEN74_RS11650 (BEN74_11650) - 2103546..2104631 (+) 1086 WP_068911540.1 DUF475 domain-containing protein -
  BEN74_RS11655 (BEN74_11655) - 2104781..2106145 (+) 1365 WP_068911567.1 MFS transporter -
  BEN74_RS11660 (BEN74_11660) ssb 2106197..2106778 (+) 582 WP_068911538.1 single-stranded DNA-binding protein Machinery gene
  BEN74_RS11670 (BEN74_11670) - 2107767..2109134 (+) 1368 WP_068913319.1 site-specific integrase -
  BEN74_RS11675 (BEN74_11675) - 2109131..2110153 (+) 1023 WP_068913316.1 hypothetical protein -
  BEN74_RS11680 (BEN74_11680) - 2110215..2111365 (+) 1151 WP_228200337.1 IS3 family transposase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20930.66 Da        Isoelectric Point: 6.4819

>NTDB_id=314716 BEN74_RS11660 WP_068911538.1 2106197..2106778(+) (ssb) [Acinetobacter sp. WCHAc010034]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSARQQSDQGQGFEQPRFNSGNQQGGYSNNQQGGYGGGQANASQGGYGGGNQ
GGYANNNPSGFAPKAPAAPAAAAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=314716 BEN74_RS11660 WP_068911538.1 2106197..2106778(+) (ssb) [Acinetobacter sp. WCHAc010034]
ATGCGTGGTGTTAATAAAGTCATTTTAGTGGGTACTTTGGGCCGAGATCCTGAAACCAAAACTTTCCCGAATGGCGGTTC
CCTGACCCAGTTCTCTATCGCTACCAGCGATTCATGGACGGATAAAAATACAGGTGAACGCAAAGAGCAGACAGAATGGC
ACCGTATTGTGCTGCACAACCGCTTGGGCGAAATTGCCCAGCAGTACCTGCGCAAAGGCTCTAAAGTGTATATTGAAGGC
TCATTGCGCACCCGCCAGTGGACCGACCAGAACGGCCAGGAGCGCTACACCACGGAAATCCGCGGCGAGCAGATGCAGAT
GCTGGACAGCGCACGCCAGCAAAGCGATCAGGGCCAGGGCTTTGAACAGCCGCGCTTCAACAGCGGCAATCAGCAGGGCG
GCTACAGCAATAACCAGCAGGGCGGTTACGGCGGCGGCCAGGCCAATGCCAGCCAAGGCGGCTATGGCGGCGGCAATCAG
GGCGGCTATGCCAACAACAACCCTAGCGGTTTTGCGCCAAAAGCTCCGGCTGCGCCAGCAGCGGCGGCTCCGGCAGATTT
GGATGATGACCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7PTT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.246

100

0.508
  ssb Vibrio cholerae strain A1552

44

100

0.456
  ssb Neisseria meningitidis MC58

38.947

98.446

0.383
  ssb Neisseria gonorrhoeae MS11

38.421

98.446

0.378

Multiple sequence alignment