Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E3151_RS25490 | Genome accession | NZ_CP038423 |
| Coordinates | 5114728..5115264 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A370V115 |
| Organism | Escherichia coli O157:H7 strain 7409 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5109728..5120264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3151_RS25470 (E3151_26245) | soxR | 5111457..5111921 (-) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
| E3151_RS25475 (E3151_26250) | soxS | 5112007..5112330 (+) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| E3151_RS25480 (E3151_26255) | pdeC | 5112333..5113919 (-) | 1587 | WP_001016522.1 | c-di-GMP phosphodiesterase PdeC | - |
| E3151_RS25485 (E3151_26260) | yjcB | 5114348..5114629 (+) | 282 | WP_001295689.1 | YjcB family protein | - |
| E3151_RS25490 (E3151_26265) | ssb | 5114728..5115264 (-) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| E3151_RS25495 (E3151_26270) | uvrA | 5115519..5118341 (+) | 2823 | WP_000357763.1 | excinuclease ABC subunit UvrA | Machinery gene |
| E3151_RS25500 (E3151_26275) | yjbR | 5118376..5118732 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| E3151_RS25505 (E3151_26280) | yjbQ | 5118736..5119152 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| E3151_RS25510 (E3151_26285) | aphA | 5119263..5119976 (-) | 714 | WP_001226923.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=314678 E3151_RS25490 WP_000168305.1 5114728..5115264(-) (ssb) [Escherichia coli O157:H7 strain 7409]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=314678 E3151_RS25490 WP_000168305.1 5114728..5115264(-) (ssb) [Escherichia coli O157:H7 strain 7409]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |