Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GBEM_RS19840 | Genome accession | NC_011146 |
| Coordinates | 4511903..4512343 (+) | Length | 146 a.a. |
| NCBI ID | WP_012532401.1 | Uniprot ID | B5EG54 |
| Organism | Citrifermentans bemidjiense Bem | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4506903..4517343
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBEM_RS19820 (Gbem_3971) | - | 4508385..4510061 (-) | 1677 | WP_012532397.1 | ribonuclease J | - |
| GBEM_RS19825 (Gbem_3972) | - | 4510117..4510518 (-) | 402 | WP_012532398.1 | tol-pal system YbgF family protein | - |
| GBEM_RS19830 (Gbem_3973) | - | 4510550..4510726 (-) | 177 | WP_318842306.1 | hypothetical protein | - |
| GBEM_RS19835 (Gbem_3974) | - | 4510733..4511428 (-) | 696 | WP_012532400.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| GBEM_RS19840 (Gbem_3975) | ssb | 4511903..4512343 (+) | 441 | WP_012532401.1 | single-stranded DNA-binding protein | Machinery gene |
| GBEM_RS19845 (Gbem_4143) | - | 4512558..4512989 (+) | 432 | WP_012532402.1 | hypothetical protein | - |
| GBEM_RS21360 (Gbem_4144) | - | 4513138..4513494 (+) | 357 | WP_012532403.1 | hypothetical protein | - |
| GBEM_RS19850 (Gbem_3976) | - | 4513808..4514383 (+) | 576 | WP_012532404.1 | hypothetical protein | - |
| GBEM_RS19855 (Gbem_3977) | - | 4514679..4515287 (-) | 609 | WP_012532405.1 | YajG family lipoprotein | - |
| GBEM_RS20990 (Gbem_3978) | - | 4515592..4516068 (+) | 477 | WP_012532406.1 | WbuC family cupin fold metalloprotein | - |
| GBEM_RS19870 (Gbem_3979) | - | 4516199..4516957 (-) | 759 | WP_012532407.1 | carboxymuconolactone decarboxylase family protein | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 16255.12 Da Isoelectric Point: 5.3430
>NTDB_id=31455 GBEM_RS19840 WP_012532401.1 4511903..4512343(+) (ssb) [Citrifermentans bemidjiense Bem]
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSVATTEKFKGKDGNWEEKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKEGKDRYTTEIVGEKMQMLSAKGEGGGGGQRQSRPQQDYNQGGGYEEPVFNPDDEIPF
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSVATTEKFKGKDGNWEEKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKEGKDRYTTEIVGEKMQMLSAKGEGGGGGQRQSRPQQDYNQGGGYEEPVFNPDDEIPF
Nucleotide
Download Length: 441 bp
>NTDB_id=31455 GBEM_RS19840 WP_012532401.1 4511903..4512343(+) (ssb) [Citrifermentans bemidjiense Bem]
ATGGCAAGTCTGAACAAGGTGATGCTCATCGGGAACCTGGGGAAAGACCCCGAGGTGCGCTACACCGCCGGCGGGACCGC
CGTAGCATCCTTCTCCGTCGCCACCACCGAGAAGTTCAAGGGCAAGGACGGCAACTGGGAAGAGAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTTGCCGAGATCGCCGGCGAGTATCTTTCCAAGGGGAAGACCGTATATATCGAAGGGCGT
CTGCAGACCCGCAAGTGGACCGACAAGGAAGGCAAAGACAGGTACACCACCGAGATCGTAGGCGAGAAGATGCAGATGCT
TTCCGCCAAAGGCGAAGGCGGCGGTGGTGGGCAGCGTCAGTCCAGGCCGCAGCAGGATTACAACCAGGGCGGCGGTTACG
AAGAGCCGGTATTCAACCCGGACGACGAGATCCCGTTCTAG
ATGGCAAGTCTGAACAAGGTGATGCTCATCGGGAACCTGGGGAAAGACCCCGAGGTGCGCTACACCGCCGGCGGGACCGC
CGTAGCATCCTTCTCCGTCGCCACCACCGAGAAGTTCAAGGGCAAGGACGGCAACTGGGAAGAGAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTTGCCGAGATCGCCGGCGAGTATCTTTCCAAGGGGAAGACCGTATATATCGAAGGGCGT
CTGCAGACCCGCAAGTGGACCGACAAGGAAGGCAAAGACAGGTACACCACCGAGATCGTAGGCGAGAAGATGCAGATGCT
TTCCGCCAAAGGCGAAGGCGGCGGTGGTGGGCAGCGTCAGTCCAGGCCGCAGCAGGATTACAACCAGGGCGGCGGTTACG
AAGAGCCGGTATTCAACCCGGACGACGAGATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
48.603 |
100 |
0.596 |
| ssb | Glaesserella parasuis strain SC1401 |
43.889 |
100 |
0.541 |
| ssb | Neisseria meningitidis MC58 |
44.509 |
100 |
0.527 |
| ssb | Neisseria gonorrhoeae MS11 |
44.509 |
100 |
0.527 |