Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D3P10_RS12110 Genome accession   NZ_CP032159
Coordinates   2441305..2441820 (-) Length   171 a.a.
NCBI ID   WP_002466536.1    Uniprot ID   A0A2V3ZFL8
Organism   Staphylococcus warneri strain 22.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2426253..2443588 2441305..2441820 within 0


Gene organization within MGE regions


Location: 2426253..2443588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P10_RS12595 - 2426253..2426429 (+) 177 WP_162837427.1 hypothetical protein -
  D3P10_RS12005 (D3P10_12005) - 2426504..2426758 (-) 255 WP_049416691.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  D3P10_RS12015 (D3P10_12015) - 2427317..2427586 (-) 270 WP_002467118.1 hypothetical protein -
  D3P10_RS12020 (D3P10_12020) - 2430065..2430580 (-) 516 WP_058709466.1 terminase small subunit -
  D3P10_RS12025 (D3P10_12025) - 2430585..2430926 (-) 342 WP_058709465.1 helix-turn-helix domain-containing protein -
  D3P10_RS12030 (D3P10_12030) - 2430929..2431387 (-) 459 WP_058709464.1 hypothetical protein -
  D3P10_RS12035 (D3P10_12035) - 2431448..2432158 (-) 711 WP_058709463.1 hypothetical protein -
  D3P10_RS12040 (D3P10_12040) - 2432188..2432529 (-) 342 WP_047210632.1 hypothetical protein -
  D3P10_RS12045 (D3P10_12045) - 2432977..2433618 (-) 642 WP_058709462.1 pathogenicity island protein -
  D3P10_RS12050 (D3P10_12050) - 2433619..2433984 (-) 366 WP_058709461.1 hypothetical protein -
  D3P10_RS12055 (D3P10_12055) - 2433996..2434271 (-) 276 WP_081047982.1 pathogenicity island protein -
  D3P10_RS12060 (D3P10_12060) - 2434258..2435061 (-) 804 WP_058709459.1 bifunctional DNA primase/polymerase -
  D3P10_RS12065 (D3P10_12065) - 2435232..2436845 (-) 1614 WP_053018617.1 hypothetical protein -
  D3P10_RS12070 (D3P10_12070) tscT 2436920..2437225 (-) 306 WP_047210626.1 type II toxin-antitoxin system toxin TscT -
  D3P10_RS12075 (D3P10_12075) - 2437225..2437587 (-) 363 WP_047210625.1 hypothetical protein -
  D3P10_RS12080 (D3P10_12080) tscA 2437589..2437801 (-) 213 WP_019235763.1 type II toxin-antitoxin system antitoxin TscA -
  D3P10_RS12600 - 2437803..2437940 (-) 138 WP_162889408.1 hypothetical protein -
  D3P10_RS12085 (D3P10_12085) - 2437956..2438228 (-) 273 WP_047210624.1 helix-turn-helix domain-containing protein -
  D3P10_RS12090 (D3P10_12090) - 2438228..2438443 (-) 216 WP_047210623.1 helix-turn-helix transcriptional regulator -
  D3P10_RS12095 (D3P10_12095) - 2438635..2439558 (+) 924 WP_047210622.1 helix-turn-helix domain-containing protein -
  D3P10_RS12100 (D3P10_12100) - 2439567..2440790 (+) 1224 WP_047210621.1 tyrosine-type recombinase/integrase -
  D3P10_RS12105 (D3P10_12105) rpsR 2441018..2441260 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  D3P10_RS12110 (D3P10_12110) ssbA 2441305..2441820 (-) 516 WP_002466536.1 single-stranded DNA-binding protein Machinery gene
  D3P10_RS12115 (D3P10_12115) rpsF 2441842..2442138 (-) 297 WP_002451521.1 30S ribosomal protein S6 -
  D3P10_RS12120 (D3P10_12120) - 2442514..2443335 (+) 822 WP_002466546.1 GH25 family lysozyme -
  D3P10_RS12125 (D3P10_12125) - 2443397..2443588 (+) 192 WP_002451523.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18856.42 Da        Isoelectric Point: 4.7410

>NTDB_id=314265 D3P10_RS12110 WP_002466536.1 2441305..2441820(-) (ssbA) [Staphylococcus warneri strain 22.1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=314265 D3P10_RS12110 WP_002466536.1 2441305..2441820(-) (ssbA) [Staphylococcus warneri strain 22.1]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V3ZFL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

36.313

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374

Multiple sequence alignment