Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LL1196_RS12120 Genome accession   NZ_CP032148
Coordinates   2313711..2313899 (-) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 1196     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2314551..2318953 2313711..2313899 flank 652


Gene organization within MGE regions


Location: 2313711..2318953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL1196_RS12120 (LL1196_03780) comGD 2313711..2313899 (-) 189 WP_014573336.1 hypothetical protein Machinery gene
  LL1196_RS12125 (LL1196_2428) comGC 2314101..2314451 (-) 351 WP_050574401.1 competence type IV pilus major pilin ComGC Machinery gene
  LL1196_RS12130 (LL1196_2429) comGB 2314496..2315521 (-) 1026 WP_050574400.1 competence type IV pilus assembly protein ComGB Machinery gene
  LL1196_RS12135 (LL1196_2430) - 2315421..2316242 (-) 822 Protein_2361 ATPase, T2SS/T4P/T4SS family -
  LL1196_RS12140 (LL1196_2431) - 2316345..2317235 (+) 891 WP_205536422.1 IS982 family transposase -
  LL1196_RS12145 (LL1196_2432) comGA 2317217..2317408 (-) 192 WP_014573341.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=314102 LL1196_RS12120 WP_014573336.1 2313711..2313899(-) (comGD) [Lactococcus cremoris strain 1196]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=314102 LL1196_RS12120 WP_014573336.1 2313711..2313899(-) (comGD) [Lactococcus cremoris strain 1196]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371

Multiple sequence alignment