Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MADE_RS01125 Genome accession   NC_011138
Coordinates   249719..250309 (+) Length   196 a.a.
NCBI ID   WP_012516753.1    Uniprot ID   F2G3Q0
Organism   Alteromonas mediterranea DE     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 244719..255309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MADE_RS01105 (MADE_1001135) - 245337..246392 (+) 1056 WP_012516750.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  MADE_RS01110 (MADE_1001140) galK 246385..247524 (+) 1140 WP_012516751.1 galactokinase -
  MADE_RS01120 (MADE_1001145) - 247892..249454 (+) 1563 WP_012516752.1 sodium/sugar symporter -
  MADE_RS01125 (MADE_1001150) ssb 249719..250309 (+) 591 WP_012516753.1 single-stranded DNA-binding protein Machinery gene
  MADE_RS01130 (MADE_1001155) - 250529..251482 (+) 954 WP_023559479.1 hypothetical protein -
  MADE_RS01135 (MADE_1001160) - 251699..254275 (-) 2577 WP_012516755.1 hypothetical protein -
  MADE_RS01140 (MADE_1001165) galE 254293..255309 (-) 1017 WP_012516756.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21299.23 Da        Isoelectric Point: 4.9562

>NTDB_id=31407 MADE_RS01125 WP_012516753.1 249719..250309(+) (ssb) [Alteromonas mediterranea DE]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGDGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQSQ
GQGGGYNQAPQGGNPSQPKTPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=31407 MADE_RS01125 WP_012516753.1 249719..250309(+) (ssb) [Alteromonas mediterranea DE]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTAGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGTCAGGATAAGTACACCACTGAAATTATCGTAGATCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGATGGTGGCGGCGGAAACGGCGGTTACCAGCGTCCTCAAAACAACCAAGGCGGTTATA
ATCAAGCGCCAGCGCAAGGTGGTTACAACCAGGCTCCACAACAAGGTGGAGGCCAGCAAGGCGGCTATAACCAGAGCCAG
GGCCAAGGCGGTGGTTATAATCAAGCGCCGCAGGGTGGTAACCCGTCACAGCCTAAGACTCCGCCTATGGCTGAACCAGA
CTTCGATTTTGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2G3Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56

100

0.571
  ssb Vibrio cholerae strain A1552

53.731

100

0.551
  ssb Neisseria meningitidis MC58

46.392

98.98

0.459
  ssb Neisseria gonorrhoeae MS11

46.392

98.98

0.459

Multiple sequence alignment