Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D2M30_RS20380 Genome accession   NZ_CP032146
Coordinates   3992794..3993312 (-) Length   172 a.a.
NCBI ID   WP_013354263.1    Uniprot ID   A0A9P1JL20
Organism   Bacillus amyloliquefaciens strain YP6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3987794..3998312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS20350 (D2M30_20375) - 3988981..3989361 (-) 381 WP_013354257.1 VOC family protein -
  D2M30_RS20355 (D2M30_20380) - 3989417..3990355 (-) 939 WP_125123571.1 LacI family DNA-binding transcriptional regulator -
  D2M30_RS20360 (D2M30_20385) xth 3990418..3991176 (-) 759 WP_125123572.1 exodeoxyribonuclease III -
  D2M30_RS20365 (D2M30_20390) - 3991215..3991742 (-) 528 WP_125123573.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  D2M30_RS20370 (D2M30_20395) - 3991735..3992322 (-) 588 WP_088613797.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  D2M30_RS20375 (D2M30_20400) rpsR 3992511..3992750 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  D2M30_RS20380 (D2M30_20405) ssbA 3992794..3993312 (-) 519 WP_013354263.1 single-stranded DNA-binding protein SsbA Machinery gene
  D2M30_RS20385 (D2M30_20410) rpsF 3993352..3993639 (-) 288 WP_013354264.1 30S ribosomal protein S6 -
  D2M30_RS20390 (D2M30_20415) ychF 3993751..3994851 (-) 1101 WP_013354265.1 redox-regulated ATPase YchF -
  D2M30_RS20395 (D2M30_20420) - 3994978..3996981 (-) 2004 WP_125123574.1 molybdopterin-dependent oxidoreductase -
  D2M30_RS20400 (D2M30_20425) - 3997028..3997234 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18717.29 Da        Isoelectric Point: 4.7621

>NTDB_id=314061 D2M30_RS20380 WP_013354263.1 3992794..3993312(-) (ssbA) [Bacillus amyloliquefaciens strain YP6]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRKQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=314061 D2M30_RS20380 WP_013354263.1 3992794..3993312(-) (ssbA) [Bacillus amyloliquefaciens strain YP6]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTAACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAAACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGTCTTCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGTTCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGAAGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.628

0.401
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372

Multiple sequence alignment