Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D2M30_RS12515 Genome accession   NZ_CP032146
Coordinates   2493452..2493787 (+) Length   111 a.a.
NCBI ID   WP_014470659.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488452..2498787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS12495 (D2M30_12520) gcvT 2489056..2490156 (-) 1101 WP_125122953.1 glycine cleavage system aminomethyltransferase GcvT -
  D2M30_RS12500 (D2M30_12525) - 2490580..2492250 (+) 1671 WP_125122954.1 DEAD/DEAH box helicase -
  D2M30_RS12505 (D2M30_12530) - 2492271..2493065 (+) 795 WP_088613113.1 YqhG family protein -
  D2M30_RS12510 (D2M30_12535) sinI 2493245..2493418 (+) 174 WP_013352860.1 anti-repressor SinI Regulator
  D2M30_RS12515 (D2M30_12540) sinR 2493452..2493787 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  D2M30_RS12520 (D2M30_12545) tasA 2493835..2494620 (-) 786 WP_013352862.1 biofilm matrix protein TasA -
  D2M30_RS12525 (D2M30_12550) sipW 2494685..2495269 (-) 585 WP_125122955.1 signal peptidase I SipW -
  D2M30_RS12530 (D2M30_12555) tapA 2495241..2495912 (-) 672 WP_125122956.1 amyloid fiber anchoring/assembly protein TapA -
  D2M30_RS12535 (D2M30_12560) - 2496170..2496499 (+) 330 WP_013352865.1 DUF3889 domain-containing protein -
  D2M30_RS12540 (D2M30_12565) - 2496540..2496719 (-) 180 WP_016938971.1 YqzE family protein -
  D2M30_RS12545 (D2M30_12570) comGG 2496776..2497153 (-) 378 WP_071348016.1 competence type IV pilus minor pilin ComGG Machinery gene
  D2M30_RS12550 (D2M30_12575) comGF 2497155..2497559 (-) 405 WP_185715963.1 competence type IV pilus minor pilin ComGF -
  D2M30_RS12555 (D2M30_12580) comGE 2497564..2497878 (-) 315 WP_125122957.1 competence type IV pilus minor pilin ComGE Machinery gene
  D2M30_RS12560 (D2M30_12585) comGD 2497862..2498299 (-) 438 WP_125122958.1 competence type IV pilus minor pilin ComGD Machinery gene
  D2M30_RS12565 (D2M30_12590) comGC 2498289..2498597 (-) 309 WP_013352870.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12986.67 Da        Isoelectric Point: 7.2026

>NTDB_id=314026 D2M30_RS12515 WP_014470659.1 2493452..2493787(+) (sinR) [Bacillus amyloliquefaciens strain YP6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLEYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=314026 D2M30_RS12515 WP_014470659.1 2493452..2493787(+) (sinR) [Bacillus amyloliquefaciens strain YP6]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGAATATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

98.198

100

0.982

Multiple sequence alignment