Detailed information NTG0314029

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: D2M30_RS12560
• Genome accession: NZ_CP032146
• Coordinates: 2497862..2498299 (-)
• Length: 145 a.a.
• NCBI ID: WP_125122958.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain YP6
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2492862..2503299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2M30_RS12510 (D2M30_12535)	sinI	2493245..2493418 (+)	174	WP_013352860.1	anti-repressor SinI	Regulator
D2M30_RS12515 (D2M30_12540)	sinR	2493452..2493787 (+)	336	WP_014470659.1	transcriptional regulator SinR	Regulator
D2M30_RS12520 (D2M30_12545)	tasA	2493835..2494620 (-)	786	WP_013352862.1	biofilm matrix protein TasA	-
D2M30_RS12525 (D2M30_12550)	sipW	2494685..2495269 (-)	585	WP_125122955.1	signal peptidase I SipW	-
D2M30_RS12530 (D2M30_12555)	tapA	2495241..2495912 (-)	672	WP_125122956.1	amyloid fiber anchoring/assembly protein TapA	-
D2M30_RS12535 (D2M30_12560)	-	2496170..2496499 (+)	330	WP_013352865.1	DUF3889 domain-containing protein	-
D2M30_RS12540 (D2M30_12565)	-	2496540..2496719 (-)	180	WP_016938971.1	YqzE family protein	-
D2M30_RS12545 (D2M30_12570)	comGG	2496776..2497153 (-)	378	WP_071348016.1	competence type IV pilus minor pilin ComGG	Machinery gene
D2M30_RS12550 (D2M30_12575)	comGF	2497155..2497559 (-)	405	WP_185715963.1	competence type IV pilus minor pilin ComGF	-
D2M30_RS12555 (D2M30_12580)	comGE	2497564..2497878 (-)	315	WP_125122957.1	competence type IV pilus minor pilin ComGE	Machinery gene
D2M30_RS12560 (D2M30_12585)	comGD	2497862..2498299 (-)	438	WP_125122958.1	competence type IV pilus minor pilin ComGD	Machinery gene
D2M30_RS12565 (D2M30_12590)	comGC	2498289..2498597 (-)	309	WP_013352870.1	competence type IV pilus major pilin ComGC	Machinery gene
D2M30_RS12570 (D2M30_12595)	comGB	2498602..2499639 (-)	1038	WP_125122959.1	competence type IV pilus assembly protein ComGB	Machinery gene
D2M30_RS12575 (D2M30_12600)	comGA	2499626..2500696 (-)	1071	WP_125122960.1	competence type IV pilus ATPase ComGA	Machinery gene
D2M30_RS12580 (D2M30_12605)	-	2500890..2501839 (-)	950	Protein_2448	magnesium transporter CorA family protein	-
D2M30_RS12585 (D2M30_12610)	-	2501986..2503287 (+)	1302	WP_088613120.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16243.58 Da
• Isoelectric Point: 9.3847

>NTDB_id=314029 D2M30_RS12560 WP_125122958.1 2497862..2498299(-) (comGD) [Bacillus amyloliquefaciens strain YP6]
MNNNRLTENGFTLLESLVVLSLASVLLTVLFTAVPPVYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSAGRNVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAERQ

Nucleotide

• Length: 438 bp

>NTDB_id=314029 D2M30_RS12560 WP_125122958.1 2497862..2498299(-) (comGD) [Bacillus amyloliquefaciens strain YP6]
TTGAACAATAACCGGCTGACAGAAAACGGATTCACCCTTCTTGAAAGCCTGGTTGTGTTAAGTCTGGCGTCCGTATTGCT
GACTGTTTTGTTCACGGCGGTTCCGCCGGTTTATACCCATCTGGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGACA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTCCCAAAAGAGCATAAATACAAA
CTGCAGTCAGCCGGAAGGAATGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCACCCGAATTCCGGCGGAAAGATTCAATTGAAGAGCGCGGGATTCACTTATGAAATAACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCAGAACGGCAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.115	95.862	0.538