Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   D3C60_RS11920 Genome accession   NZ_CP032144
Coordinates   2451320..2451757 (-) Length   145 a.a.
NCBI ID   WP_007408322.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-439D     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2446320..2456757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS11870 (D3C60_11870) sinI 2446704..2446877 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  D3C60_RS11875 (D3C60_11875) sinR 2446911..2447246 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  D3C60_RS11880 (D3C60_11880) - 2447294..2448079 (-) 786 WP_007408329.1 TasA family protein -
  D3C60_RS11885 (D3C60_11885) - 2448144..2448728 (-) 585 WP_015240205.1 signal peptidase I -
  D3C60_RS11890 (D3C60_11890) tapA 2448700..2449371 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  D3C60_RS11895 (D3C60_11895) - 2449630..2449959 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  D3C60_RS11900 (D3C60_11900) - 2449999..2450178 (-) 180 WP_003153093.1 YqzE family protein -
  D3C60_RS11905 (D3C60_11905) comGG 2450235..2450612 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  D3C60_RS11910 (D3C60_11910) comGF 2450613..2451113 (-) 501 WP_257645080.1 competence type IV pilus minor pilin ComGF -
  D3C60_RS11915 (D3C60_11915) comGE 2451022..2451336 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  D3C60_RS11920 (D3C60_11920) comGD 2451320..2451757 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  D3C60_RS11925 (D3C60_11925) comGC 2451747..2452013 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  D3C60_RS11930 (D3C60_11930) comGB 2452060..2453097 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  D3C60_RS11935 (D3C60_11935) comGA 2453084..2454154 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  D3C60_RS11940 (D3C60_11940) - 2454346..2455296 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  D3C60_RS11945 (D3C60_11945) - 2455442..2456743 (+) 1302 WP_032866438.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16314.79 Da        Isoelectric Point: 10.2475

>NTDB_id=313929 D3C60_RS11920 WP_007408322.1 2451320..2451757(-) (comGD) [Bacillus velezensis strain BIM B-439D]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=313929 D3C60_RS11920 WP_007408322.1 2451320..2451757(-) (comGD) [Bacillus velezensis strain BIM B-439D]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566

Multiple sequence alignment