Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D3C60_RS11875 Genome accession   NZ_CP032144
Coordinates   2446911..2447246 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-439D     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441911..2452246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS11855 (D3C60_11855) gcvT 2442517..2443617 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  D3C60_RS11860 (D3C60_11860) - 2444041..2445711 (+) 1671 WP_007408331.1 SNF2-related protein -
  D3C60_RS11865 (D3C60_11865) - 2445733..2446527 (+) 795 WP_007408330.1 YqhG family protein -
  D3C60_RS11870 (D3C60_11870) sinI 2446704..2446877 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  D3C60_RS11875 (D3C60_11875) sinR 2446911..2447246 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  D3C60_RS11880 (D3C60_11880) - 2447294..2448079 (-) 786 WP_007408329.1 TasA family protein -
  D3C60_RS11885 (D3C60_11885) - 2448144..2448728 (-) 585 WP_015240205.1 signal peptidase I -
  D3C60_RS11890 (D3C60_11890) tapA 2448700..2449371 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  D3C60_RS11895 (D3C60_11895) - 2449630..2449959 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  D3C60_RS11900 (D3C60_11900) - 2449999..2450178 (-) 180 WP_003153093.1 YqzE family protein -
  D3C60_RS11905 (D3C60_11905) comGG 2450235..2450612 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  D3C60_RS11910 (D3C60_11910) comGF 2450613..2451113 (-) 501 WP_257645080.1 competence type IV pilus minor pilin ComGF -
  D3C60_RS11915 (D3C60_11915) comGE 2451022..2451336 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  D3C60_RS11920 (D3C60_11920) comGD 2451320..2451757 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  D3C60_RS11925 (D3C60_11925) comGC 2451747..2452013 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=313927 D3C60_RS11875 WP_003153104.1 2446911..2447246(+) (sinR) [Bacillus velezensis strain BIM B-439D]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=313927 D3C60_RS11875 WP_003153104.1 2446911..2447246(+) (sinR) [Bacillus velezensis strain BIM B-439D]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment