Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   CDG61_RS16590 Genome accession   NZ_CP032143
Coordinates   3397767..3398912 (+) Length   381 a.a.
NCBI ID   WP_087551149.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3392767..3403912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS17705 - 3392965..3393219 (-) 255 WP_087514170.1 hypothetical protein -
  CDG61_RS16570 (CDG61_16570) - 3393249..3395321 (-) 2073 WP_087551152.1 TonB-dependent copper receptor -
  CDG61_RS16575 (CDG61_16575) - 3395393..3395851 (-) 459 WP_087551151.1 DUF2946 family protein -
  CDG61_RS16580 (CDG61_16580) def 3395942..3396472 (-) 531 WP_087514173.1 peptide deformylase -
  CDG61_RS16585 (CDG61_16585) tsaP 3396593..3397747 (+) 1155 WP_087551150.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CDG61_RS16590 (CDG61_16590) dprA 3397767..3398912 (+) 1146 WP_087551149.1 DNA-processing protein DprA Machinery gene
  CDG61_RS16595 (CDG61_16595) - 3398940..3399509 (+) 570 WP_087551148.1 L-threonylcarbamoyladenylate synthase -
  CDG61_RS16600 (CDG61_16600) - 3400019..3400903 (-) 885 WP_087551158.1 DMT family transporter -
  CDG61_RS16605 (CDG61_16605) - 3401020..3401664 (-) 645 WP_087551147.1 TetR/AcrR family transcriptional regulator -
  CDG61_RS16610 (CDG61_16610) - 3401795..3403024 (+) 1230 WP_087551146.1 MFS transporter -
  CDG61_RS16615 (CDG61_16615) - 3403012..3403800 (+) 789 WP_416240694.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 381 a.a.        Molecular weight: 42298.32 Da        Isoelectric Point: 6.8543

>NTDB_id=313885 CDG61_RS16590 WP_087551149.1 3397767..3398912(+) (dprA) [Acinetobacter sp. WCHAc010052]
MLNPLSQAQIETITLWYLVQHSLSAFYKLKQHFGSVHLAIAPKGLAQWSQLNLHKNHIQRAQEFQTDAGQQKFAELLQSI
QSHTDFVLIPESTDYPAQLLPYTSPPPILFGQGNAQALLQPQIAIVGSRKPSPHGRQIAYDFAFYLSEKGFYINSGLAQG
IDEAAHKGGLKHQRTIAVMGTGLDQTYPTAHTQLRQQITEQRGAVITEFLPGTLPLQQHFPRRNRIVSGLSLGVIVAEAS
LNSGSLITAQLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQVIEDLALPTQWMVQQKKETSTVPETPVLPE
HLIALYQTLDWNGLNMDQLANKLSMDISTLTGQLMELELQGMCIQQSGLYLRCRQGHLGSQ

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=313885 CDG61_RS16590 WP_087551149.1 3397767..3398912(+) (dprA) [Acinetobacter sp. WCHAc010052]
ATGCTGAACCCTTTATCACAAGCGCAGATTGAAACAATTACCTTGTGGTATCTGGTTCAGCATTCTCTTTCTGCTTTTTA
TAAACTGAAACAACATTTTGGCAGTGTCCATCTGGCGATAGCCCCCAAAGGTCTTGCGCAGTGGTCTCAGCTGAATCTGC
ATAAAAATCACATACAGCGTGCACAGGAATTTCAGACTGACGCTGGACAACAGAAATTTGCAGAACTTCTGCAAAGCATT
CAATCTCATACAGATTTTGTTCTGATCCCTGAATCCACCGACTATCCTGCTCAGCTTCTTCCTTATACCAGCCCTCCGCC
CATTCTGTTTGGACAGGGAAATGCTCAAGCTTTGCTGCAACCTCAGATTGCGATCGTCGGCAGTCGCAAACCCAGTCCTC
ACGGACGTCAGATTGCCTATGATTTTGCCTTTTATCTGAGCGAAAAGGGTTTTTATATCAACAGTGGACTGGCTCAGGGT
ATTGATGAAGCTGCCCATAAAGGCGGGTTGAAGCACCAGCGAACCATTGCAGTCATGGGAACAGGACTGGACCAGACTTA
TCCGACAGCCCATACCCAGCTCAGACAGCAGATTACTGAACAGCGTGGTGCGGTCATCACAGAGTTTTTACCTGGTACAC
TTCCTCTTCAGCAGCATTTTCCACGGCGTAACCGCATTGTCAGTGGACTAAGCCTGGGCGTCATCGTTGCAGAAGCCAGT
CTGAACAGTGGCTCACTGATCACAGCTCAACTTGCCGCTGAACAGGGAAAAACCGTGTTTGCCATACCTGGACATATTTA
CAGCGAGTTTCATCAGGGATGTCATCAACTGATCCGTGAAGGTGCAATCCTGATTGACCATCCTGAACAGGTGATTGAGG
ACCTGGCACTGCCTACCCAGTGGATGGTGCAGCAAAAGAAAGAGACCAGCACGGTTCCAGAAACACCTGTCCTGCCTGAG
CATCTGATTGCTTTATACCAAACCCTGGACTGGAACGGACTGAACATGGATCAGCTGGCAAACAAACTCAGTATGGATAT
TTCAACACTGACTGGTCAGCTGATGGAACTGGAGCTTCAGGGGATGTGCATTCAACAGAGTGGATTATATCTGCGTTGTC
GTCAGGGTCATTTAGGTTCACAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

68.8

98.425

0.677

  dprA Acinetobacter baumannii D1279779

68.267

98.425

0.672

  dprA Acinetobacter baylyi ADP1

61.842

99.738

0.617


Multiple sequence alignment