Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3155_RS05980 Genome accession   NZ_CP038394
Coordinates   1226808..1227323 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O55:H7 strain DEC5A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221808..1232323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3155_RS05935 (E3155_06075) csrA 1222625..1222810 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  E3155_RS05965 (E3155_06105) yqaB 1224038..1224604 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E3155_RS05970 (E3155_06110) yqaA 1224601..1225029 (+) 429 WP_001287450.1 YqaA family protein -
  E3155_RS05975 (E3155_06115) gshA 1225102..1226658 (+) 1557 WP_000611784.1 glutamate--cysteine ligase -
  E3155_RS05980 (E3155_06120) luxS 1226808..1227323 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  E3155_RS05985 (E3155_06125) emrB 1227387..1228925 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E3155_RS05990 (E3155_06130) emrA 1228942..1230114 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E3155_RS05995 (E3155_06135) emrR 1230241..1230771 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E3155_RS06000 (E3155_06140) ygaH 1230862..1231197 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  E3155_RS06005 (E3155_06145) ygaZ 1231187..1231924 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=313847 E3155_RS05980 WP_001130215.1 1226808..1227323(+) (luxS) [Escherichia coli O55:H7 strain DEC5A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=313847 E3155_RS05980 WP_001130215.1 1226808..1227323(+) (luxS) [Escherichia coli O55:H7 strain DEC5A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment