Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDG61_RS01485 Genome accession   NZ_CP032143
Coordinates   233977..234276 (-) Length   99 a.a.
NCBI ID   WP_087549794.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 226845..241983 233977..234276 within 0


Gene organization within MGE regions


Location: 226845..241983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS01455 (CDG61_01455) - 226845..227072 (-) 228 WP_087512076.1 hypothetical protein -
  CDG61_RS17420 - 229830..230432 (-) 603 WP_147387764.1 hypothetical protein -
  CDG61_RS01470 (CDG61_01470) - 232000..232674 (-) 675 WP_087549791.1 hypothetical protein -
  CDG61_RS01475 (CDG61_01475) - 233084..233545 (+) 462 WP_171405563.1 Panacea domain-containing protein -
  CDG61_RS01480 (CDG61_01480) - 233559..233960 (+) 402 WP_087549793.1 hypothetical protein -
  CDG61_RS01485 (CDG61_01485) ssb 233977..234276 (-) 300 WP_087549794.1 single-stranded DNA-binding protein Machinery gene
  CDG61_RS01490 (CDG61_01490) - 234324..235112 (+) 789 WP_087549795.1 suppressor of fused domain protein -
  CDG61_RS01495 (CDG61_01495) - 235549..238014 (-) 2466 WP_087549796.1 DUF927 domain-containing protein -
  CDG61_RS01500 (CDG61_01500) - 238011..238313 (-) 303 WP_087549797.1 hypothetical protein -
  CDG61_RS01505 (CDG61_01505) - 238316..238816 (-) 501 WP_228199648.1 hypothetical protein -
  CDG61_RS01510 (CDG61_01510) - 238827..239195 (-) 369 WP_087549798.1 hypothetical protein -
  CDG61_RS01515 (CDG61_01515) - 239188..239739 (-) 552 WP_087549799.1 Bro-N domain-containing protein -
  CDG61_RS01520 (CDG61_01520) - 239736..239945 (-) 210 WP_087549800.1 helix-turn-helix domain-containing protein -
  CDG61_RS01525 (CDG61_01525) - 239948..240235 (-) 288 WP_087549801.1 helix-turn-helix transcriptional regulator -
  CDG61_RS17560 - 240432..241352 (-) 921 WP_205671795.1 coiled-coil domain-containing protein -
  CDG61_RS01535 (CDG61_01535) - 241333..241983 (-) 651 WP_087549802.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11131.50 Da        Isoelectric Point: 9.9264

>NTDB_id=313847 CDG61_RS01485 WP_087549794.1 233977..234276(-) (ssb) [Acinetobacter sp. WCHAc010052]
MGVLGRDPETKNFPNGGSITTFSVATSEFWKDKTTGERKEATEWHRITTNGRLADVAGKYLKKGGKVYIEGSLRTRKWKD
QSGADREVTEIRADELQLL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=313847 CDG61_RS01485 WP_087549794.1 233977..234276(-) (ssb) [Acinetobacter sp. WCHAc010052]
ATGGGTGTGCTGGGTCGTGACCCTGAAACGAAGAATTTTCCGAATGGTGGCAGCATTACTACATTCAGCGTGGCAACTTC
CGAATTTTGGAAAGACAAGACCACTGGAGAACGTAAAGAGGCAACGGAATGGCATAGAATCACCACCAACGGACGTTTAG
CGGATGTTGCAGGCAAGTACCTCAAGAAAGGCGGAAAGGTTTATATCGAAGGCTCATTGCGTACAAGGAAATGGAAAGAC
CAAAGCGGTGCAGATCGGGAGGTAACAGAGATTCGAGCTGATGAGCTGCAATTGCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

60.606

100

0.606
  ssb Vibrio cholerae strain A1552

60.44

91.919

0.556
  ssb Neisseria meningitidis MC58

50.505

100

0.505
  ssb Neisseria gonorrhoeae MS11

50.505

100

0.505

Multiple sequence alignment