Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDG61_RS01385 Genome accession   NZ_CP032143
Coordinates   215308..215883 (+) Length   191 a.a.
NCBI ID   WP_087549778.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 210308..220883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS01360 (CDG61_01360) - 210465..210749 (+) 285 WP_087512060.1 YciI family protein -
  CDG61_RS01365 (CDG61_01365) - 211002..211727 (+) 726 WP_087549776.1 hypothetical protein -
  CDG61_RS01370 (CDG61_01370) tenA 211787..212458 (-) 672 WP_087549777.1 thiaminase II -
  CDG61_RS01375 (CDG61_01375) - 212672..213757 (+) 1086 WP_087512063.1 DUF475 domain-containing protein -
  CDG61_RS01380 (CDG61_01380) - 213892..215256 (+) 1365 WP_087512064.1 MFS transporter -
  CDG61_RS01385 (CDG61_01385) ssb 215308..215883 (+) 576 WP_087549778.1 single-stranded DNA-binding protein Machinery gene
  CDG61_RS01390 (CDG61_01390) - 215982..216422 (+) 441 WP_087549779.1 hypothetical protein -
  CDG61_RS01395 (CDG61_01395) - 216469..216933 (-) 465 WP_087549780.1 hotdog fold domain-containing protein -
  CDG61_RS01400 (CDG61_01400) - 217069..217689 (+) 621 WP_087549781.1 TetR/AcrR family transcriptional regulator -
  CDG61_RS01405 (CDG61_01405) ahpC 217874..218437 (+) 564 WP_087512069.1 alkyl hydroperoxide reductase subunit C -
  CDG61_RS01410 (CDG61_01410) - 218695..220089 (+) 1395 WP_087549782.1 hypothetical protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20998.74 Da        Isoelectric Point: 6.4819

>NTDB_id=313846 CDG61_RS01385 WP_087549778.1 215308..215883(+) (ssb) [Acinetobacter sp. WCHAc010052]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWVDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSNRQQSEQGQGFEQPRFNNNSQGGYNNNQQSGYGNQGGNNQGGYGGQAPQS
GYANNNPSGFAPKAPAAPAAAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=313846 CDG61_RS01385 WP_087549778.1 215308..215883(+) (ssb) [Acinetobacter sp. WCHAc010052]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTAGGTAAAGATCCTGAAACGAAAACATTCCCAAACGGGGGCTC
ACTCACTCAGTTTTCTATCGCAACCAGCGATTCCTGGGTAGATAAAAACTCAGGCGAACGTAAAGAACAGACAGAATGGC
ACCGCATTGTACTGCATAACCGTTTAGGTGAAATCGCACAGCAGTATCTGCGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCACTGCGTACTCGTCAGTGGACTGACCAGAATGGACAGGAACGCTATACCACTGAAATCCGTGGTGACCAGATGCAGAT
GCTGGACAGCAACCGCCAGCAGAGTGAACAGGGTCAGGGCTTTGAACAGCCACGTTTCAACAATAACAGTCAGGGTGGTT
ATAACAATAACCAGCAGAGCGGTTATGGTAATCAGGGTGGAAACAACCAGGGTGGTTATGGCGGTCAGGCACCTCAGTCT
GGTTATGCCAACAATAACCCAAGTGGTTTTGCACCAAAAGCACCTGCAGCTCCAGCCGCAGCACCTGCTGATTTAGATGA
TGATCTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.761

100

0.524
  ssb Vibrio cholerae strain A1552

44.103

100

0.45
  ssb Neisseria gonorrhoeae MS11

39.286

100

0.403
  ssb Neisseria meningitidis MC58

39.487

100

0.403

Multiple sequence alignment