Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDG60_RS17115 Genome accession   NZ_CP032134
Coordinates   3383067..3383651 (-) Length   194 a.a.
NCBI ID   WP_087512065.1    Uniprot ID   A0A3B7M1U0
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3378067..3388651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS17090 (CDG60_17090) - 3378862..3380256 (-) 1395 WP_087512070.1 hypothetical protein -
  CDG60_RS17095 (CDG60_17095) ahpC 3380514..3381077 (-) 564 WP_087512069.1 alkyl hydroperoxide reductase subunit C -
  CDG60_RS17100 (CDG60_17100) - 3381262..3381882 (-) 621 WP_087512068.1 TetR/AcrR family transcriptional regulator -
  CDG60_RS17105 (CDG60_17105) - 3382018..3382482 (+) 465 WP_087512067.1 hotdog fold domain-containing protein -
  CDG60_RS17110 (CDG60_17110) - 3382771..3382968 (-) 198 WP_087512066.1 hypothetical protein -
  CDG60_RS17115 (CDG60_17115) ssb 3383067..3383651 (-) 585 WP_087512065.1 single-stranded DNA-binding protein Machinery gene
  CDG60_RS17120 (CDG60_17120) - 3383703..3385067 (-) 1365 WP_087512064.1 MFS transporter -
  CDG60_RS17125 (CDG60_17125) - 3385202..3386287 (-) 1086 WP_087512063.1 DUF475 domain-containing protein -
  CDG60_RS17130 (CDG60_17130) tenA 3386501..3387172 (+) 672 WP_087512062.1 thiaminase II -
  CDG60_RS17135 (CDG60_17135) - 3387232..3387957 (-) 726 WP_087512061.1 hypothetical protein -
  CDG60_RS17140 (CDG60_17140) - 3388210..3388494 (-) 285 WP_087512060.1 YciI family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21268.00 Da        Isoelectric Point: 6.4819

>NTDB_id=313845 CDG60_RS17115 WP_087512065.1 3383067..3383651(-) (ssb) [Acinetobacter chinensis strain WCHAc010005]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWVDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSNRQQSEQGQGFEQPRFNNNSQGGYNNNQQGGYGNQGGNNQGGYGNQGGQA
PQSGYANNNPSGFAPKAPAAPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=313845 CDG60_RS17115 WP_087512065.1 3383067..3383651(-) (ssb) [Acinetobacter chinensis strain WCHAc010005]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTAGGTAAAGATCCTGAAACGAAAACATTCCCAAACGGGGGCTC
ACTCACTCAGTTTTCTATCGCAACTAGCGATTCCTGGGTAGATAAAAACTCAGGCGAACGTAAAGAACAGACAGAATGGC
ACCGCATTGTATTGCATAACCGTTTAGGCGAAATTGCACAGCAGTATCTGCGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCACTGCGTACCCGTCAGTGGACAGACCAGAATGGACAGGAACGCTATACCACTGAAATCCGTGGTGACCAGATGCAGAT
GCTGGACAGCAACCGCCAGCAGAGTGAGCAGGGTCAGGGCTTTGAACAGCCGCGTTTCAACAATAACAGTCAGGGTGGTT
ATAACAATAACCAGCAGGGTGGTTATGGAAATCAGGGTGGAAACAACCAGGGTGGTTATGGCAATCAGGGCGGTCAGGCA
CCTCAGTCTGGTTATGCCAACAATAACCCAAGTGGTTTTGCACCTAAAGCACCTGCAGCTCCAGCCGCAGCACCTGCTGA
TTTAGATGATGATCTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7M1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.515
  ssb Vibrio cholerae strain A1552

43.59

100

0.438
  ssb Neisseria meningitidis MC58

40.404

100

0.412
  ssb Neisseria gonorrhoeae MS11

39.286

100

0.397

Multiple sequence alignment