Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SEZ_RS06650 Genome accession   NC_011134
Coordinates   1408225..1408947 (-) Length   240 a.a.
NCBI ID   WP_041785615.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus MGCS10565     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1403225..1413947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEZ_RS06625 (Sez_1364) pstB 1403390..1404142 (-) 753 WP_012515962.1 phosphate ABC transporter ATP-binding protein PstB -
  SEZ_RS06630 (Sez_1365) pstA 1404144..1404959 (-) 816 WP_012515963.1 phosphate ABC transporter permease PstA -
  SEZ_RS06635 (Sez_1366) pstC 1404952..1405815 (-) 864 WP_012515964.1 phosphate ABC transporter permease subunit PstC -
  SEZ_RS06640 (Sez_1367) - 1405885..1406757 (-) 873 WP_012515965.1 substrate-binding domain-containing protein -
  SEZ_RS06645 (Sez_1368) - 1406916..1408241 (-) 1326 WP_041785614.1 ATP-binding protein -
  SEZ_RS06650 (Sez_1369) vicR 1408225..1408947 (-) 723 WP_041785615.1 response regulator transcription factor Regulator
  SEZ_RS09880 (Sez_1370) - 1409119..1409274 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  SEZ_RS06660 (Sez_1371) - 1409315..1410217 (+) 903 WP_012515969.1 permease -
  SEZ_RS06665 (Sez_1373) - 1410217..1411034 (+) 818 Protein_1286 TIGR03943 family protein -
  SEZ_RS06670 (Sez_1374) - 1411219..1412640 (-) 1422 WP_012515972.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28108.49 Da        Isoelectric Point: 6.0693

>NTDB_id=31378 SEZ_RS06650 WP_041785615.1 1408225..1408947(-) (vicR) [Streptococcus equi subsp. zooepidemicus MGCS10565]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRSKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=31378 SEZ_RS06650 WP_041785615.1 1408225..1408947(-) (vicR) [Streptococcus equi subsp. zooepidemicus MGCS10565]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTTCTAAGGGAAGTAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCATCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

49.123

95

0.467
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.59

97.5

0.425
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment