Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BAR1_RS08865 | Genome accession | NZ_CP032125 |
| Coordinates | 1780239..1780730 (+) | Length | 163 a.a. |
| NCBI ID | WP_118942689.1 | Uniprot ID | - |
| Organism | Profundibacter amoris strain BAR1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1775239..1785730
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAR1_RS08840 (BAR1_08840) | miaA | 1775304..1776152 (+) | 849 | WP_118942685.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| BAR1_RS08845 (BAR1_08845) | - | 1776272..1777072 (+) | 801 | WP_118942686.1 | AraC family transcriptional regulator | - |
| BAR1_RS08850 (BAR1_08850) | - | 1777243..1777785 (+) | 543 | WP_118942687.1 | VOC family protein | - |
| BAR1_RS08855 (BAR1_08855) | - | 1777920..1778873 (-) | 954 | WP_228408818.1 | formylglycine-generating enzyme family protein | - |
| BAR1_RS08860 (BAR1_08860) | - | 1779012..1779602 (-) | 591 | WP_118942688.1 | lytic transglycosylase domain-containing protein | - |
| BAR1_RS08865 (BAR1_08865) | ssb | 1780239..1780730 (+) | 492 | WP_118942689.1 | single-stranded DNA-binding protein | Machinery gene |
| BAR1_RS08870 (BAR1_08870) | aroB | 1780874..1781986 (-) | 1113 | WP_118942690.1 | 3-dehydroquinate synthase | - |
| BAR1_RS08875 (BAR1_08875) | - | 1781987..1782589 (-) | 603 | WP_118942691.1 | shikimate kinase | - |
| BAR1_RS18290 | - | 1782655..1782789 (+) | 135 | WP_267128372.1 | hypothetical protein | - |
| BAR1_RS08880 (BAR1_08880) | - | 1782779..1784311 (+) | 1533 | WP_228408520.1 | hypothetical protein | - |
| BAR1_RS08885 (BAR1_08885) | - | 1784316..1785245 (+) | 930 | WP_118942692.1 | site-specific tyrosine recombinase XerD | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17031.67 Da Isoelectric Point: 5.2531
>NTDB_id=313768 BAR1_RS08865 WP_118942689.1 1780239..1780730(+) (ssb) [Profundibacter amoris strain BAR1]
MAGSVNKVILIGNLGADPEVRTFQNGGKVCNLRIATSETWKDKNTGERREKTEWHTVAIFSEGLVRVCEQYLKKGSKVYI
EGALQTRKWQDQSGNDRYSTEVVLSGFNGTLVMLDGRSGGGSGGGGYGGGDQGGYGGGSSGGGYDSGPQQGGGGGNIDDE
IPF
MAGSVNKVILIGNLGADPEVRTFQNGGKVCNLRIATSETWKDKNTGERREKTEWHTVAIFSEGLVRVCEQYLKKGSKVYI
EGALQTRKWQDQSGNDRYSTEVVLSGFNGTLVMLDGRSGGGSGGGGYGGGDQGGYGGGSSGGGYDSGPQQGGGGGNIDDE
IPF
Nucleotide
Download Length: 492 bp
>NTDB_id=313768 BAR1_RS08865 WP_118942689.1 1780239..1780730(+) (ssb) [Profundibacter amoris strain BAR1]
ATGGCGGGTTCGGTTAACAAGGTAATATTGATAGGCAATCTGGGCGCTGATCCCGAGGTGCGCACATTCCAGAATGGCGG
CAAGGTTTGCAATCTGAGGATTGCCACCTCGGAGACATGGAAAGACAAGAACACCGGCGAGCGCCGCGAGAAAACCGAAT
GGCACACGGTCGCGATTTTCTCGGAAGGGCTGGTGCGGGTCTGCGAGCAATATCTGAAAAAAGGCTCGAAGGTTTATATC
GAGGGCGCATTGCAAACCCGCAAATGGCAGGATCAATCGGGCAACGACCGGTATTCGACAGAGGTGGTTCTGTCCGGGTT
CAACGGCACATTGGTTATGCTGGACGGCCGTAGTGGCGGCGGATCAGGTGGTGGCGGCTATGGTGGCGGGGATCAGGGCG
GCTATGGCGGCGGATCATCCGGTGGCGGATATGACAGCGGCCCACAGCAAGGTGGCGGTGGCGGCAACATCGATGACGAG
ATCCCGTTCTAG
ATGGCGGGTTCGGTTAACAAGGTAATATTGATAGGCAATCTGGGCGCTGATCCCGAGGTGCGCACATTCCAGAATGGCGG
CAAGGTTTGCAATCTGAGGATTGCCACCTCGGAGACATGGAAAGACAAGAACACCGGCGAGCGCCGCGAGAAAACCGAAT
GGCACACGGTCGCGATTTTCTCGGAAGGGCTGGTGCGGGTCTGCGAGCAATATCTGAAAAAAGGCTCGAAGGTTTATATC
GAGGGCGCATTGCAAACCCGCAAATGGCAGGATCAATCGGGCAACGACCGGTATTCGACAGAGGTGGTTCTGTCCGGGTT
CAACGGCACATTGGTTATGCTGGACGGCCGTAGTGGCGGCGGATCAGGTGGTGGCGGCTATGGTGGCGGGGATCAGGGCG
GCTATGGCGGCGGATCATCCGGTGGCGGATATGACAGCGGCCCACAGCAAGGTGGCGGTGGCGGCAACATCGATGACGAG
ATCCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
53.757 |
100 |
0.571 |
| ssb | Glaesserella parasuis strain SC1401 |
48.387 |
100 |
0.552 |
| ssb | Neisseria gonorrhoeae MS11 |
40.223 |
100 |
0.442 |
| ssb | Neisseria meningitidis MC58 |
40.223 |
100 |
0.442 |