Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3157_RS22930 Genome accession   NZ_CP038386
Coordinates   4776803..4777339 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O55:H7 strain DEC5D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4771803..4782339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3157_RS22910 (E3157_23410) soxR 4773532..4773996 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  E3157_RS22915 (E3157_23415) soxS 4774082..4774405 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  E3157_RS22920 (E3157_23420) pdeC 4774408..4775994 (-) 1587 WP_001016525.1 c-di-GMP phosphodiesterase PdeC -
  E3157_RS22925 (E3157_23425) yjcB 4776423..4776704 (+) 282 WP_001295689.1 YjcB family protein -
  E3157_RS22930 (E3157_23430) ssb 4776803..4777339 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  E3157_RS22935 (E3157_23435) uvrA 4777594..4780416 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  E3157_RS22940 (E3157_23440) yjbR 4780451..4780807 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  E3157_RS22945 (E3157_23445) yjbQ 4780811..4781227 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  E3157_RS22950 (E3157_23450) aphA 4781338..4782051 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=313729 E3157_RS22930 WP_000168305.1 4776803..4777339(-) (ssb) [Escherichia coli O55:H7 strain DEC5D]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=313729 E3157_RS22930 WP_000168305.1 4776803..4777339(-) (ssb) [Escherichia coli O55:H7 strain DEC5D]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489