Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D2194_RS20255 Genome accession   NZ_CP032073
Coordinates   4198223..4198759 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CT29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4193223..4203759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2194_RS20235 (D2194_21915) soxR 4194951..4195415 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  D2194_RS20240 (D2194_21920) soxS 4195501..4195824 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  D2194_RS20245 (D2194_21925) pdeC 4195827..4197413 (-) 1587 Protein_4008 c-di-GMP phosphodiesterase PdeC -
  D2194_RS20250 (D2194_21935) yjcB 4197843..4198124 (+) 282 WP_001295689.1 YjcB family protein -
  D2194_RS20255 (D2194_21940) ssb 4198223..4198759 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D2194_RS20260 (D2194_21945) uvrA 4199013..4201835 (+) 2823 WP_212403144.1 excinuclease ABC subunit UvrA -
  D2194_RS20265 (D2194_21950) yjbR 4201870..4202226 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  D2194_RS20270 (D2194_21955) yjbQ 4202230..4202646 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  D2194_RS20275 (D2194_21960) aphA 4202757..4203470 (-) 714 WP_077477728.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=313594 D2194_RS20255 WP_000168305.1 4198223..4198759(-) (ssb) [Escherichia coli strain CT29]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=313594 D2194_RS20255 WP_000168305.1 4198223..4198759(-) (ssb) [Escherichia coli strain CT29]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment