Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D2J89_RS06270 Genome accession   NZ_CP032066
Coordinates   1289964..1290500 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain E166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1284964..1295500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2J89_RS06240 (D2J89_06805) soxR 1285916..1286380 (-) 465 WP_039004760.1 redox-sensitive transcriptional activator SoxR -
  D2J89_RS06245 (D2J89_06810) soxS 1286466..1286789 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  D2J89_RS06250 (D2J89_06815) pdeC 1286792..1287598 (-) 807 Protein_1240 c-di-GMP phosphodiesterase PdeC -
  D2J89_RS06255 (D2J89_06825) - 1287654..1288351 (+) 698 WP_106425952.1 IS1-like element IS1A family transposase -
  D2J89_RS06260 (D2J89_06830) pdeC 1288367..1289155 (-) 789 Protein_1242 c-di-GMP phosphodiesterase PdeC -
  D2J89_RS06265 (D2J89_06840) yjcB 1289584..1289865 (+) 282 WP_001295689.1 YjcB family protein -
  D2J89_RS06270 (D2J89_06845) ssb 1289964..1290500 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D2J89_RS06275 (D2J89_06850) uvrA 1290755..1293577 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  D2J89_RS06280 (D2J89_06855) yjbR 1293612..1293968 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  D2J89_RS06285 (D2J89_06860) yjbQ 1293972..1294388 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  D2J89_RS06290 (D2J89_06865) aphA 1294499..1295212 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=313558 D2J89_RS06270 WP_000168305.1 1289964..1290500(-) (ssb) [Escherichia coli strain E166]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=313558 D2J89_RS06270 WP_000168305.1 1289964..1290500(-) (ssb) [Escherichia coli strain E166]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment